Gene : AL3G50880 A. lyrata v2.1

Defline:  (1 of 6) 1.1.1.100 - 3-oxoacyl-[acyl-carrier-protein] reductase Genomic Order:  3777
Name:  ? AL3G50880 Secondary Identifier:  ? PAC:35940873

Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata FASYN-ELONG-PWY Arabidopsis lyrata pathologic  
Alyrata PWY-5156 Arabidopsis lyrata pathologic  
Alyrata PWY-5971 Arabidopsis lyrata pathologic  
Alyrata PWY-5973 Arabidopsis lyrata pathologic  
Alyrata PWY-5989 Arabidopsis lyrata pathologic  
Alyrata PWY-6282 Arabidopsis lyrata pathologic  
Alyrata PWY-7388 Arabidopsis lyrata pathologic  
Alyrata PWY-7663 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G50880 0.5kb upstream 0.5kb upstream 1677   true scaffold_3: 22296380-22298056 Arabidopsis lyrata
AL3G50880 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 22296380-22296879 Arabidopsis lyrata
AL3G50880 0.5kb downstream 0.5kb downstream 1677   true scaffold_3: 22296880-22298556 Arabidopsis lyrata
AL3G50880 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 22298057-22298556 Arabidopsis lyrata
AL3G50880 1.0kb upstream 1.0kb upstream 2177   true scaffold_3: 22295880-22298056 Arabidopsis lyrata
AL3G50880 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 22295880-22296879 Arabidopsis lyrata
AL3G50880 1.0kb downstream 1.0kb downstream 2177   true scaffold_3: 22296880-22299056 Arabidopsis lyrata
AL3G50880 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 22298057-22299056 Arabidopsis lyrata
AL3G50880 2.0kb upstream 2.0kb upstream 3177   true scaffold_3: 22294880-22298056 Arabidopsis lyrata
AL3G50880 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 22294880-22296879 Arabidopsis lyrata
AL3G50880 2.0kb downstream 2.0kb downstream 3177   true scaffold_3: 22296880-22300056 Arabidopsis lyrata
AL3G50880 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 22298057-22300056 Arabidopsis lyrata
AL3G50880 5.0kb upstream 5.0kb upstream 6177   true scaffold_3: 22291880-22298056 Arabidopsis lyrata
AL3G50880 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 22291880-22296879 Arabidopsis lyrata
AL3G50880 5.0kb downstream 5.0kb downstream 6177   true scaffold_3: 22296880-22303056 Arabidopsis lyrata
AL3G50880 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 22298057-22303056 Arabidopsis lyrata
AL3G50880 10.0kb upstream 10.0kb upstream 11177   true scaffold_3: 22286880-22298056 Arabidopsis lyrata
AL3G50880 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 22286880-22296879 Arabidopsis lyrata
AL3G50880 10.0kb downstream 10.0kb downstream 11177   true scaffold_3: 22296880-22308056 Arabidopsis lyrata
AL3G50880 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 22298057-22308056 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381807 5261 Brassicaceae View MSA
123803459 5264 Brassicales-Malvales View MSA
124300567 5266 SBM View MSA
124251104 5268 Malvidae View MSA
124062329 5270 Rosid View MSA
123751674 5271 Pentapetalae View MSA
122788273 5272 Eudicot View MSA
122044153 5273 Angiosperm View MSA
123429133 5275 Viridiplantae View MSA
121344803 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain