Gene : AL3G53780 A. lyrata v2.1

Defline:  (1 of 1) 2.5.1.9 - Riboflavin synthase Genomic Order:  4037
Name:  ? AL3G53780 Secondary Identifier:  ? PAC:35940322

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata RIBOSYN2-PWY Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G53780 0.5kb upstream 0.5kb upstream 2192   true scaffold_3: 24004432-24006623 Arabidopsis lyrata
AL3G53780 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 24004432-24004931 Arabidopsis lyrata
AL3G53780 0.5kb downstream 0.5kb downstream 2192   true scaffold_3: 24004932-24007123 Arabidopsis lyrata
AL3G53780 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 24006624-24007123 Arabidopsis lyrata
AL3G53780 1.0kb upstream 1.0kb upstream 2692   true scaffold_3: 24003932-24006623 Arabidopsis lyrata
AL3G53780 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 24003932-24004931 Arabidopsis lyrata
AL3G53780 1.0kb downstream 1.0kb downstream 2692   true scaffold_3: 24004932-24007623 Arabidopsis lyrata
AL3G53780 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 24006624-24007623 Arabidopsis lyrata
AL3G53780 2.0kb upstream 2.0kb upstream 3692   true scaffold_3: 24002932-24006623 Arabidopsis lyrata
AL3G53780 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 24002932-24004931 Arabidopsis lyrata
AL3G53780 2.0kb downstream 2.0kb downstream 3692   true scaffold_3: 24004932-24008623 Arabidopsis lyrata
AL3G53780 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 24006624-24008623 Arabidopsis lyrata
AL3G53780 5.0kb upstream 5.0kb upstream 6692   true scaffold_3: 23999932-24006623 Arabidopsis lyrata
AL3G53780 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 23999932-24004931 Arabidopsis lyrata
AL3G53780 5.0kb downstream 5.0kb downstream 6692   true scaffold_3: 24004932-24011623 Arabidopsis lyrata
AL3G53780 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 24006624-24011623 Arabidopsis lyrata
AL3G53780 10.0kb upstream 10.0kb upstream 11692   true scaffold_3: 23994932-24006623 Arabidopsis lyrata
AL3G53780 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 23994932-24004931 Arabidopsis lyrata
AL3G53780 10.0kb downstream 10.0kb downstream 11692   true scaffold_3: 24004932-24016623 Arabidopsis lyrata
AL3G53780 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 24006624-24016623 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360568 5261 Brassicaceae View MSA
123834076 5264 Brassicales-Malvales View MSA
124342348 5266 SBM View MSA
124237548 5268 Malvidae View MSA
124067605 5270 Rosid View MSA
123749559 5271 Pentapetalae View MSA
122790279 5272 Eudicot View MSA
122043158 5273 Angiosperm View MSA
121344512 5274 Embryophyte View MSA
123423798 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain