Gene : AL3G52770 A. lyrata v2.1

Defline:  (1 of 3) PTHR31321:SF11 - PECTINESTERASE 10-RELATED Genomic Order:  3945
Name:  ? AL3G52770 Secondary Identifier:  ? PAC:35942433

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1081 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G52770 0.5kb upstream 0.5kb upstream 1189   true scaffold_3: 23447987-23449175 Arabidopsis lyrata
AL3G52770 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 23448676-23449175 Arabidopsis lyrata
AL3G52770 0.5kb downstream 0.5kb downstream 1189   true scaffold_3: 23447487-23448675 Arabidopsis lyrata
AL3G52770 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 23447487-23447986 Arabidopsis lyrata
AL3G52770 1.0kb upstream 1.0kb upstream 1689   true scaffold_3: 23447987-23449675 Arabidopsis lyrata
AL3G52770 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 23448676-23449675 Arabidopsis lyrata
AL3G52770 1.0kb downstream 1.0kb downstream 1689   true scaffold_3: 23446987-23448675 Arabidopsis lyrata
AL3G52770 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 23446987-23447986 Arabidopsis lyrata
AL3G52770 2.0kb upstream 2.0kb upstream 2689   true scaffold_3: 23447987-23450675 Arabidopsis lyrata
AL3G52770 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 23448676-23450675 Arabidopsis lyrata
AL3G52770 2.0kb downstream 2.0kb downstream 2689   true scaffold_3: 23445987-23448675 Arabidopsis lyrata
AL3G52770 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 23445987-23447986 Arabidopsis lyrata
AL3G52770 5.0kb upstream 5.0kb upstream 5689   true scaffold_3: 23447987-23453675 Arabidopsis lyrata
AL3G52770 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 23448676-23453675 Arabidopsis lyrata
AL3G52770 5.0kb downstream 5.0kb downstream 5689   true scaffold_3: 23442987-23448675 Arabidopsis lyrata
AL3G52770 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 23442987-23447986 Arabidopsis lyrata
AL3G52770 10.0kb upstream 10.0kb upstream 10689   true scaffold_3: 23447987-23458675 Arabidopsis lyrata
AL3G52770 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 23448676-23458675 Arabidopsis lyrata
AL3G52770 10.0kb downstream 10.0kb downstream 10689   true scaffold_3: 23437987-23448675 Arabidopsis lyrata
AL3G52770 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 23437987-23447986 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122327470 5261 Brassicaceae View MSA
123768899 5264 Brassicales-Malvales View MSA
124267477 5266 SBM View MSA
124251807 5268 Malvidae View MSA
124073271 5270 Rosid View MSA
123752785 5271 Pentapetalae View MSA
122796250 5272 Eudicot View MSA
122050958 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain