Gene : AL3G52520 A. lyrata v2.1

Defline:  (1 of 3) 1.5.1.3 - Dihydrofolate reductase / Tetrahydrofolate dehydrogenase Genomic Order:  3922
Name:  ? AL3G52520 Secondary Identifier:  ? PAC:35941563

Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-3841 Arabidopsis lyrata pathologic  
Alyrata PWY-6612 Arabidopsis lyrata pathologic  
Alyrata PWY-6614 Arabidopsis lyrata pathologic  
Alyrata PWY-7184 Arabidopsis lyrata pathologic  
Alyrata PWY-7199 Arabidopsis lyrata pathologic  
Alyrata PWY-7200 Arabidopsis lyrata pathologic  
Alyrata PWY-7210 Arabidopsis lyrata pathologic  
Alyrata PWY-7211 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G52520 0.5kb upstream 0.5kb upstream 3307   true scaffold_3: 23280956-23284262 Arabidopsis lyrata
AL3G52520 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 23283763-23284262 Arabidopsis lyrata
AL3G52520 0.5kb downstream 0.5kb downstream 3307   true scaffold_3: 23280456-23283762 Arabidopsis lyrata
AL3G52520 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 23280456-23280955 Arabidopsis lyrata
AL3G52520 1.0kb upstream 1.0kb upstream 3807   true scaffold_3: 23280956-23284762 Arabidopsis lyrata
AL3G52520 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 23283763-23284762 Arabidopsis lyrata
AL3G52520 1.0kb downstream 1.0kb downstream 3807   true scaffold_3: 23279956-23283762 Arabidopsis lyrata
AL3G52520 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 23279956-23280955 Arabidopsis lyrata
AL3G52520 2.0kb upstream 2.0kb upstream 4807   true scaffold_3: 23280956-23285762 Arabidopsis lyrata
AL3G52520 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 23283763-23285762 Arabidopsis lyrata
AL3G52520 2.0kb downstream 2.0kb downstream 4807   true scaffold_3: 23278956-23283762 Arabidopsis lyrata
AL3G52520 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 23278956-23280955 Arabidopsis lyrata
AL3G52520 5.0kb upstream 5.0kb upstream 7807   true scaffold_3: 23280956-23288762 Arabidopsis lyrata
AL3G52520 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 23283763-23288762 Arabidopsis lyrata
AL3G52520 5.0kb downstream 5.0kb downstream 7807   true scaffold_3: 23275956-23283762 Arabidopsis lyrata
AL3G52520 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 23275956-23280955 Arabidopsis lyrata
AL3G52520 10.0kb upstream 10.0kb upstream 12807   true scaffold_3: 23280956-23293762 Arabidopsis lyrata
AL3G52520 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 23283763-23293762 Arabidopsis lyrata
AL3G52520 10.0kb downstream 10.0kb downstream 12807   true scaffold_3: 23270956-23283762 Arabidopsis lyrata
AL3G52520 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 23270956-23280955 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367382 5261 Brassicaceae View MSA
123840013 5264 Brassicales-Malvales View MSA
124341694 5266 SBM View MSA
124241487 5268 Malvidae View MSA
124063247 5270 Rosid View MSA
123746183 5271 Pentapetalae View MSA
122795819 5272 Eudicot View MSA
122041907 5273 Angiosperm View MSA
121345404 5274 Embryophyte View MSA
123424391 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain