Gene : AL4G11900 A. lyrata v2.1

Defline:  (1 of 1) K15334 - multisite-specific tRNA:(cytosine-C5)-methyltransferase [EC:2.1.1.202] (NCL1, TRM4) Genomic Order:  169
Name:  ? AL4G11900 Secondary Identifier:  ? PAC:35923011

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-6829 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL4G11900 0.5kb upstream 0.5kb upstream 4619   true scaffold_4: 928885-933503 Arabidopsis lyrata
AL4G11900 0.5kb upstream 0.5kb upstream 500   false scaffold_4: 933004-933503 Arabidopsis lyrata
AL4G11900 0.5kb downstream 0.5kb downstream 4619   true scaffold_4: 928385-933003 Arabidopsis lyrata
AL4G11900 0.5kb downstream 0.5kb downstream 500   false scaffold_4: 928385-928884 Arabidopsis lyrata
AL4G11900 1.0kb upstream 1.0kb upstream 5119   true scaffold_4: 928885-934003 Arabidopsis lyrata
AL4G11900 1.0kb upstream 1.0kb upstream 1000   false scaffold_4: 933004-934003 Arabidopsis lyrata
AL4G11900 1.0kb downstream 1.0kb downstream 5119   true scaffold_4: 927885-933003 Arabidopsis lyrata
AL4G11900 1.0kb downstream 1.0kb downstream 1000   false scaffold_4: 927885-928884 Arabidopsis lyrata
AL4G11900 2.0kb upstream 2.0kb upstream 6119   true scaffold_4: 928885-935003 Arabidopsis lyrata
AL4G11900 2.0kb upstream 2.0kb upstream 2000   false scaffold_4: 933004-935003 Arabidopsis lyrata
AL4G11900 2.0kb downstream 2.0kb downstream 6119   true scaffold_4: 926885-933003 Arabidopsis lyrata
AL4G11900 2.0kb downstream 2.0kb downstream 2000   false scaffold_4: 926885-928884 Arabidopsis lyrata
AL4G11900 5.0kb upstream 5.0kb upstream 9119   true scaffold_4: 928885-938003 Arabidopsis lyrata
AL4G11900 5.0kb upstream 5.0kb upstream 5000   false scaffold_4: 933004-938003 Arabidopsis lyrata
AL4G11900 5.0kb downstream 5.0kb downstream 9119   true scaffold_4: 923885-933003 Arabidopsis lyrata
AL4G11900 5.0kb downstream 5.0kb downstream 5000   false scaffold_4: 923885-928884 Arabidopsis lyrata
AL4G11900 10.0kb upstream 10.0kb upstream 14119   true scaffold_4: 928885-943003 Arabidopsis lyrata
AL4G11900 10.0kb upstream 10.0kb upstream 10000   false scaffold_4: 933004-943003 Arabidopsis lyrata
AL4G11900 10.0kb downstream 10.0kb downstream 14119   true scaffold_4: 918885-933003 Arabidopsis lyrata
AL4G11900 10.0kb downstream 10.0kb downstream 10000   false scaffold_4: 918885-928884 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363512 5261 Brassicaceae View MSA
123834871 5264 Brassicales-Malvales View MSA
124341938 5266 SBM View MSA
124238434 5268 Malvidae View MSA
124062723 5270 Rosid View MSA
123742505 5271 Pentapetalae View MSA
122793605 5272 Eudicot View MSA
122043899 5273 Angiosperm View MSA
121349940 5274 Embryophyte View MSA
123426394 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain