Gene : AL4G20170 A. lyrata v2.1

Defline:  (1 of 1) 2.7.1.148 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase / CMK Genomic Order:  844
Name:  ? AL4G20170 Secondary Identifier:  ? PAC:35923353

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7560 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL4G20170 0.5kb upstream 0.5kb upstream 3064   true scaffold_4: 10414106-10417169 Arabidopsis lyrata
AL4G20170 0.5kb upstream 0.5kb upstream 500   false scaffold_4: 10416670-10417169 Arabidopsis lyrata
AL4G20170 0.5kb downstream 0.5kb downstream 3064   true scaffold_4: 10413606-10416669 Arabidopsis lyrata
AL4G20170 0.5kb downstream 0.5kb downstream 500   false scaffold_4: 10413606-10414105 Arabidopsis lyrata
AL4G20170 1.0kb upstream 1.0kb upstream 3564   true scaffold_4: 10414106-10417669 Arabidopsis lyrata
AL4G20170 1.0kb upstream 1.0kb upstream 1000   false scaffold_4: 10416670-10417669 Arabidopsis lyrata
AL4G20170 1.0kb downstream 1.0kb downstream 3564   true scaffold_4: 10413106-10416669 Arabidopsis lyrata
AL4G20170 1.0kb downstream 1.0kb downstream 1000   false scaffold_4: 10413106-10414105 Arabidopsis lyrata
AL4G20170 2.0kb upstream 2.0kb upstream 4564   true scaffold_4: 10414106-10418669 Arabidopsis lyrata
AL4G20170 2.0kb upstream 2.0kb upstream 2000   false scaffold_4: 10416670-10418669 Arabidopsis lyrata
AL4G20170 2.0kb downstream 2.0kb downstream 4564   true scaffold_4: 10412106-10416669 Arabidopsis lyrata
AL4G20170 2.0kb downstream 2.0kb downstream 2000   false scaffold_4: 10412106-10414105 Arabidopsis lyrata
AL4G20170 5.0kb upstream 5.0kb upstream 7564   true scaffold_4: 10414106-10421669 Arabidopsis lyrata
AL4G20170 5.0kb upstream 5.0kb upstream 5000   false scaffold_4: 10416670-10421669 Arabidopsis lyrata
AL4G20170 5.0kb downstream 5.0kb downstream 7564   true scaffold_4: 10409106-10416669 Arabidopsis lyrata
AL4G20170 5.0kb downstream 5.0kb downstream 5000   false scaffold_4: 10409106-10414105 Arabidopsis lyrata
AL4G20170 10.0kb upstream 10.0kb upstream 12564   true scaffold_4: 10414106-10426669 Arabidopsis lyrata
AL4G20170 10.0kb upstream 10.0kb upstream 10000   false scaffold_4: 10416670-10426669 Arabidopsis lyrata
AL4G20170 10.0kb downstream 10.0kb downstream 12564   true scaffold_4: 10404106-10416669 Arabidopsis lyrata
AL4G20170 10.0kb downstream 10.0kb downstream 10000   false scaffold_4: 10404106-10414105 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372695 5261 Brassicaceae View MSA
123831547 5264 Brassicales-Malvales View MSA
124340153 5266 SBM View MSA
124238115 5268 Malvidae View MSA
124062770 5270 Rosid View MSA
123737425 5271 Pentapetalae View MSA
122788330 5272 Eudicot View MSA
122044611 5273 Angiosperm View MSA
121345778 5274 Embryophyte View MSA
123424084 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain