Gene : AL4G21940 A. lyrata v2.1

Defline:  (1 of 1) PTHR10003:SF34 - SUPEROXIDE DISMUTASE [CU-ZN] 2, CHLOROPLASTIC Genomic Order:  995
Name:  ? AL4G21940 Secondary Identifier:  ? PAC:35922943

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata DETOX1-PWY Arabidopsis lyrata pathologic  
Alyrata DETOX1-PWY-1 Arabidopsis lyrata pathologic  
Alyrata PWY-6854 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL4G21940 0.5kb upstream 0.5kb upstream 2525   true scaffold_4: 11988853-11991377 Arabidopsis lyrata
AL4G21940 0.5kb upstream 0.5kb upstream 500   false scaffold_4: 11990878-11991377 Arabidopsis lyrata
AL4G21940 0.5kb downstream 0.5kb downstream 2525   true scaffold_4: 11988353-11990877 Arabidopsis lyrata
AL4G21940 0.5kb downstream 0.5kb downstream 500   false scaffold_4: 11988353-11988852 Arabidopsis lyrata
AL4G21940 1.0kb upstream 1.0kb upstream 3025   true scaffold_4: 11988853-11991877 Arabidopsis lyrata
AL4G21940 1.0kb upstream 1.0kb upstream 1000   false scaffold_4: 11990878-11991877 Arabidopsis lyrata
AL4G21940 1.0kb downstream 1.0kb downstream 3025   true scaffold_4: 11987853-11990877 Arabidopsis lyrata
AL4G21940 1.0kb downstream 1.0kb downstream 1000   false scaffold_4: 11987853-11988852 Arabidopsis lyrata
AL4G21940 2.0kb upstream 2.0kb upstream 4025   true scaffold_4: 11988853-11992877 Arabidopsis lyrata
AL4G21940 2.0kb upstream 2.0kb upstream 2000   false scaffold_4: 11990878-11992877 Arabidopsis lyrata
AL4G21940 2.0kb downstream 2.0kb downstream 4025   true scaffold_4: 11986853-11990877 Arabidopsis lyrata
AL4G21940 2.0kb downstream 2.0kb downstream 2000   false scaffold_4: 11986853-11988852 Arabidopsis lyrata
AL4G21940 5.0kb upstream 5.0kb upstream 7025   true scaffold_4: 11988853-11995877 Arabidopsis lyrata
AL4G21940 5.0kb upstream 5.0kb upstream 5000   false scaffold_4: 11990878-11995877 Arabidopsis lyrata
AL4G21940 5.0kb downstream 5.0kb downstream 7025   true scaffold_4: 11983853-11990877 Arabidopsis lyrata
AL4G21940 5.0kb downstream 5.0kb downstream 5000   false scaffold_4: 11983853-11988852 Arabidopsis lyrata
AL4G21940 10.0kb upstream 10.0kb upstream 12025   true scaffold_4: 11988853-12000877 Arabidopsis lyrata
AL4G21940 10.0kb upstream 10.0kb upstream 10000   false scaffold_4: 11990878-12000877 Arabidopsis lyrata
AL4G21940 10.0kb downstream 10.0kb downstream 12025   true scaffold_4: 11978853-11990877 Arabidopsis lyrata
AL4G21940 10.0kb downstream 10.0kb downstream 10000   false scaffold_4: 11978853-11988852 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375601 5261 Brassicaceae View MSA
123837251 5264 Brassicales-Malvales View MSA
124340795 5266 SBM View MSA
124253159 5268 Malvidae View MSA
124067425 5270 Rosid View MSA
123737273 5271 Pentapetalae View MSA
122788875 5272 Eudicot View MSA
122047736 5273 Angiosperm View MSA
121347419 5274 Embryophyte View MSA
123427939 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain