Gene : AL4G27500 A. lyrata v2.1

Defline:  (1 of 1) PTHR12725//PTHR12725:SF81 - HALOACID DEHALOGENASE-LIKE HYDROLASE // SUBFAMILY NOT NAMED Genomic Order:  1504
Name:  ? AL4G27500 Secondary Identifier:  ? PAC:35923787

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7204 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL4G27500 0.5kb upstream 0.5kb upstream 2305   true scaffold_4: 15186354-15188658 Arabidopsis lyrata
AL4G27500 0.5kb upstream 0.5kb upstream 500   false scaffold_4: 15186354-15186853 Arabidopsis lyrata
AL4G27500 0.5kb downstream 0.5kb downstream 2305   true scaffold_4: 15186854-15189158 Arabidopsis lyrata
AL4G27500 0.5kb downstream 0.5kb downstream 500   false scaffold_4: 15188659-15189158 Arabidopsis lyrata
AL4G27500 1.0kb upstream 1.0kb upstream 2805   true scaffold_4: 15185854-15188658 Arabidopsis lyrata
AL4G27500 1.0kb upstream 1.0kb upstream 1000   false scaffold_4: 15185854-15186853 Arabidopsis lyrata
AL4G27500 1.0kb downstream 1.0kb downstream 2805   true scaffold_4: 15186854-15189658 Arabidopsis lyrata
AL4G27500 1.0kb downstream 1.0kb downstream 1000   false scaffold_4: 15188659-15189658 Arabidopsis lyrata
AL4G27500 2.0kb upstream 2.0kb upstream 3805   true scaffold_4: 15184854-15188658 Arabidopsis lyrata
AL4G27500 2.0kb upstream 2.0kb upstream 2000   false scaffold_4: 15184854-15186853 Arabidopsis lyrata
AL4G27500 2.0kb downstream 2.0kb downstream 3805   true scaffold_4: 15186854-15190658 Arabidopsis lyrata
AL4G27500 2.0kb downstream 2.0kb downstream 2000   false scaffold_4: 15188659-15190658 Arabidopsis lyrata
AL4G27500 5.0kb upstream 5.0kb upstream 6805   true scaffold_4: 15181854-15188658 Arabidopsis lyrata
AL4G27500 5.0kb upstream 5.0kb upstream 5000   false scaffold_4: 15181854-15186853 Arabidopsis lyrata
AL4G27500 5.0kb downstream 5.0kb downstream 6805   true scaffold_4: 15186854-15193658 Arabidopsis lyrata
AL4G27500 5.0kb downstream 5.0kb downstream 5000   false scaffold_4: 15188659-15193658 Arabidopsis lyrata
AL4G27500 10.0kb upstream 10.0kb upstream 11805   true scaffold_4: 15176854-15188658 Arabidopsis lyrata
AL4G27500 10.0kb upstream 10.0kb upstream 10000   false scaffold_4: 15176854-15186853 Arabidopsis lyrata
AL4G27500 10.0kb downstream 10.0kb downstream 11805   true scaffold_4: 15186854-15198658 Arabidopsis lyrata
AL4G27500 10.0kb downstream 10.0kb downstream 10000   false scaffold_4: 15188659-15198658 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360172 5261 Brassicaceae View MSA
123829872 5264 Brassicales-Malvales View MSA
124339280 5266 SBM View MSA
124243356 5268 Malvidae View MSA
124062962 5270 Rosid View MSA
123740146 5271 Pentapetalae View MSA
122790968 5272 Eudicot View MSA
122048898 5273 Angiosperm View MSA
121311158 5274 Embryophyte View MSA
123426890 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain