Gene : AL4G27310 A. lyrata v2.1

Defline:  (1 of 4) PTHR12741:SF9 - CALLOSE SYNTHASE 1-RELATED Genomic Order:  1486
Name:  ? AL4G27310 Secondary Identifier:  ? PAC:35923514

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-6773 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL4G27310 0.5kb upstream 0.5kb upstream 12391   true scaffold_4: 15084572-15096962 Arabidopsis lyrata
AL4G27310 0.5kb upstream 0.5kb upstream 500   false scaffold_4: 15084572-15085071 Arabidopsis lyrata
AL4G27310 0.5kb downstream 0.5kb downstream 12391   true scaffold_4: 15085072-15097462 Arabidopsis lyrata
AL4G27310 0.5kb downstream 0.5kb downstream 500   false scaffold_4: 15096963-15097462 Arabidopsis lyrata
AL4G27310 1.0kb upstream 1.0kb upstream 12891   true scaffold_4: 15084072-15096962 Arabidopsis lyrata
AL4G27310 1.0kb upstream 1.0kb upstream 1000   false scaffold_4: 15084072-15085071 Arabidopsis lyrata
AL4G27310 1.0kb downstream 1.0kb downstream 12891   true scaffold_4: 15085072-15097962 Arabidopsis lyrata
AL4G27310 1.0kb downstream 1.0kb downstream 1000   false scaffold_4: 15096963-15097962 Arabidopsis lyrata
AL4G27310 2.0kb upstream 2.0kb upstream 13891   true scaffold_4: 15083072-15096962 Arabidopsis lyrata
AL4G27310 2.0kb upstream 2.0kb upstream 2000   false scaffold_4: 15083072-15085071 Arabidopsis lyrata
AL4G27310 2.0kb downstream 2.0kb downstream 13891   true scaffold_4: 15085072-15098962 Arabidopsis lyrata
AL4G27310 2.0kb downstream 2.0kb downstream 2000   false scaffold_4: 15096963-15098962 Arabidopsis lyrata
AL4G27310 5.0kb upstream 5.0kb upstream 16891   true scaffold_4: 15080072-15096962 Arabidopsis lyrata
AL4G27310 5.0kb upstream 5.0kb upstream 5000   false scaffold_4: 15080072-15085071 Arabidopsis lyrata
AL4G27310 5.0kb downstream 5.0kb downstream 16891   true scaffold_4: 15085072-15101962 Arabidopsis lyrata
AL4G27310 5.0kb downstream 5.0kb downstream 5000   false scaffold_4: 15096963-15101962 Arabidopsis lyrata
AL4G27310 10.0kb upstream 10.0kb upstream 21891   true scaffold_4: 15075072-15096962 Arabidopsis lyrata
AL4G27310 10.0kb upstream 10.0kb upstream 10000   false scaffold_4: 15075072-15085071 Arabidopsis lyrata
AL4G27310 10.0kb downstream 10.0kb downstream 21891   true scaffold_4: 15085072-15106962 Arabidopsis lyrata
AL4G27310 10.0kb downstream 10.0kb downstream 10000   false scaffold_4: 15096963-15106962 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368152 5261 Brassicaceae View MSA
123839763 5264 Brassicales-Malvales View MSA
124346959 5266 SBM View MSA
124251802 5268 Malvidae View MSA
124072639 5270 Rosid View MSA
123745171 5271 Pentapetalae View MSA
122788947 5272 Eudicot View MSA
122050431 5273 Angiosperm View MSA
121349066 5274 Embryophyte View MSA
123428420 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain