Gene : AL4G38560 A. lyrata v2.1

Defline:  (1 of 1) PTHR11728:SF13 - GLYCEROL-3-PHOSPHATE DEHYDROGENASE [NAD(+)] 2, CHLOROPLASTIC Genomic Order:  2543
Name:  ? AL4G38560 Secondary Identifier:  ? PAC:35922535

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-6118 Arabidopsis lyrata pathologic  
Alyrata PWY-7411 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL4G38560 0.5kb upstream 0.5kb upstream 2871   true scaffold_4: 19843614-19846484 Arabidopsis lyrata
AL4G38560 0.5kb upstream 0.5kb upstream 500   false scaffold_4: 19843614-19844113 Arabidopsis lyrata
AL4G38560 0.5kb downstream 0.5kb downstream 2871   true scaffold_4: 19844114-19846984 Arabidopsis lyrata
AL4G38560 0.5kb downstream 0.5kb downstream 500   false scaffold_4: 19846485-19846984 Arabidopsis lyrata
AL4G38560 1.0kb upstream 1.0kb upstream 3371   true scaffold_4: 19843114-19846484 Arabidopsis lyrata
AL4G38560 1.0kb upstream 1.0kb upstream 1000   false scaffold_4: 19843114-19844113 Arabidopsis lyrata
AL4G38560 1.0kb downstream 1.0kb downstream 3371   true scaffold_4: 19844114-19847484 Arabidopsis lyrata
AL4G38560 1.0kb downstream 1.0kb downstream 1000   false scaffold_4: 19846485-19847484 Arabidopsis lyrata
AL4G38560 2.0kb upstream 2.0kb upstream 4371   true scaffold_4: 19842114-19846484 Arabidopsis lyrata
AL4G38560 2.0kb upstream 2.0kb upstream 2000   false scaffold_4: 19842114-19844113 Arabidopsis lyrata
AL4G38560 2.0kb downstream 2.0kb downstream 4371   true scaffold_4: 19844114-19848484 Arabidopsis lyrata
AL4G38560 2.0kb downstream 2.0kb downstream 2000   false scaffold_4: 19846485-19848484 Arabidopsis lyrata
AL4G38560 5.0kb upstream 5.0kb upstream 7371   true scaffold_4: 19839114-19846484 Arabidopsis lyrata
AL4G38560 5.0kb upstream 5.0kb upstream 5000   false scaffold_4: 19839114-19844113 Arabidopsis lyrata
AL4G38560 5.0kb downstream 5.0kb downstream 7371   true scaffold_4: 19844114-19851484 Arabidopsis lyrata
AL4G38560 5.0kb downstream 5.0kb downstream 5000   false scaffold_4: 19846485-19851484 Arabidopsis lyrata
AL4G38560 10.0kb upstream 10.0kb upstream 12371   true scaffold_4: 19834114-19846484 Arabidopsis lyrata
AL4G38560 10.0kb upstream 10.0kb upstream 10000   false scaffold_4: 19834114-19844113 Arabidopsis lyrata
AL4G38560 10.0kb downstream 10.0kb downstream 12371   true scaffold_4: 19844114-19856484 Arabidopsis lyrata
AL4G38560 10.0kb downstream 10.0kb downstream 10000   false scaffold_4: 19846485-19856484 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370506 5261 Brassicaceae View MSA
123834500 5264 Brassicales-Malvales View MSA
124342001 5266 SBM View MSA
124238702 5268 Malvidae View MSA
124071828 5270 Rosid View MSA
123739883 5271 Pentapetalae View MSA
122793723 5272 Eudicot View MSA
122048104 5273 Angiosperm View MSA
121348116 5274 Embryophyte View MSA
123428470 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain