Gene : AL4G37180 A. lyrata v2.1

Defline:  (1 of 3) PTHR22763:SF5 - E3 UBIQUITIN-PROTEIN LIGASE CIP8 Genomic Order:  2412
Name:  ? AL4G37180 Secondary Identifier:  ? PAC:35923823

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7511 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL4G37180 0.5kb upstream 0.5kb upstream 2695   true scaffold_4: 19277588-19280282 Arabidopsis lyrata
AL4G37180 0.5kb upstream 0.5kb upstream 500   false scaffold_4: 19279783-19280282 Arabidopsis lyrata
AL4G37180 0.5kb downstream 0.5kb downstream 2695   true scaffold_4: 19277088-19279782 Arabidopsis lyrata
AL4G37180 0.5kb downstream 0.5kb downstream 500   false scaffold_4: 19277088-19277587 Arabidopsis lyrata
AL4G37180 1.0kb upstream 1.0kb upstream 3195   true scaffold_4: 19277588-19280782 Arabidopsis lyrata
AL4G37180 1.0kb upstream 1.0kb upstream 1000   false scaffold_4: 19279783-19280782 Arabidopsis lyrata
AL4G37180 1.0kb downstream 1.0kb downstream 3195   true scaffold_4: 19276588-19279782 Arabidopsis lyrata
AL4G37180 1.0kb downstream 1.0kb downstream 1000   false scaffold_4: 19276588-19277587 Arabidopsis lyrata
AL4G37180 2.0kb upstream 2.0kb upstream 4195   true scaffold_4: 19277588-19281782 Arabidopsis lyrata
AL4G37180 2.0kb upstream 2.0kb upstream 2000   false scaffold_4: 19279783-19281782 Arabidopsis lyrata
AL4G37180 2.0kb downstream 2.0kb downstream 4195   true scaffold_4: 19275588-19279782 Arabidopsis lyrata
AL4G37180 2.0kb downstream 2.0kb downstream 2000   false scaffold_4: 19275588-19277587 Arabidopsis lyrata
AL4G37180 5.0kb upstream 5.0kb upstream 7195   true scaffold_4: 19277588-19284782 Arabidopsis lyrata
AL4G37180 5.0kb upstream 5.0kb upstream 5000   false scaffold_4: 19279783-19284782 Arabidopsis lyrata
AL4G37180 5.0kb downstream 5.0kb downstream 7195   true scaffold_4: 19272588-19279782 Arabidopsis lyrata
AL4G37180 5.0kb downstream 5.0kb downstream 5000   false scaffold_4: 19272588-19277587 Arabidopsis lyrata
AL4G37180 10.0kb upstream 10.0kb upstream 12195   true scaffold_4: 19277588-19289782 Arabidopsis lyrata
AL4G37180 10.0kb upstream 10.0kb upstream 10000   false scaffold_4: 19279783-19289782 Arabidopsis lyrata
AL4G37180 10.0kb downstream 10.0kb downstream 12195   true scaffold_4: 19267588-19279782 Arabidopsis lyrata
AL4G37180 10.0kb downstream 10.0kb downstream 10000   false scaffold_4: 19267588-19277587 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363386 5261 Brassicaceae View MSA
123838117 5264 Brassicales-Malvales View MSA
124341456 5266 SBM View MSA
124249586 5268 Malvidae View MSA
124073026 5270 Rosid View MSA
123745848 5271 Pentapetalae View MSA
122795555 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain