Gene : AL4G41400 A. lyrata v2.1

Defline:  (1 of 4) 2.3.3.1 - Citrate (Si)-synthase / Citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO->acetyl-CoA) Genomic Order:  2816
Name:  ? AL4G41400 Secondary Identifier:  ? PAC:35924942

Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata GLYOXYLATE-BYPASS Arabidopsis lyrata pathologic  
Alyrata PWY-5464 Arabidopsis lyrata pathologic  
Alyrata PWY-561 Arabidopsis lyrata pathologic  
Alyrata PWY-5690 Arabidopsis lyrata pathologic  
Alyrata PWY-6549 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL4G41400 0.5kb upstream 0.5kb upstream 3737   true scaffold_4: 20919019-20922755 Arabidopsis lyrata
AL4G41400 0.5kb upstream 0.5kb upstream 500   false scaffold_4: 20922256-20922755 Arabidopsis lyrata
AL4G41400 0.5kb downstream 0.5kb downstream 3737   true scaffold_4: 20918519-20922255 Arabidopsis lyrata
AL4G41400 0.5kb downstream 0.5kb downstream 500   false scaffold_4: 20918519-20919018 Arabidopsis lyrata
AL4G41400 1.0kb upstream 1.0kb upstream 4237   true scaffold_4: 20919019-20923255 Arabidopsis lyrata
AL4G41400 1.0kb upstream 1.0kb upstream 1000   false scaffold_4: 20922256-20923255 Arabidopsis lyrata
AL4G41400 1.0kb downstream 1.0kb downstream 4237   true scaffold_4: 20918019-20922255 Arabidopsis lyrata
AL4G41400 1.0kb downstream 1.0kb downstream 1000   false scaffold_4: 20918019-20919018 Arabidopsis lyrata
AL4G41400 2.0kb upstream 2.0kb upstream 5237   true scaffold_4: 20919019-20924255 Arabidopsis lyrata
AL4G41400 2.0kb upstream 2.0kb upstream 2000   false scaffold_4: 20922256-20924255 Arabidopsis lyrata
AL4G41400 2.0kb downstream 2.0kb downstream 5237   true scaffold_4: 20917019-20922255 Arabidopsis lyrata
AL4G41400 2.0kb downstream 2.0kb downstream 2000   false scaffold_4: 20917019-20919018 Arabidopsis lyrata
AL4G41400 5.0kb upstream 5.0kb upstream 8237   true scaffold_4: 20919019-20927255 Arabidopsis lyrata
AL4G41400 5.0kb upstream 5.0kb upstream 5000   false scaffold_4: 20922256-20927255 Arabidopsis lyrata
AL4G41400 5.0kb downstream 5.0kb downstream 8237   true scaffold_4: 20914019-20922255 Arabidopsis lyrata
AL4G41400 5.0kb downstream 5.0kb downstream 5000   false scaffold_4: 20914019-20919018 Arabidopsis lyrata
AL4G41400 10.0kb upstream 10.0kb upstream 13237   true scaffold_4: 20919019-20932255 Arabidopsis lyrata
AL4G41400 10.0kb upstream 10.0kb upstream 10000   false scaffold_4: 20922256-20932255 Arabidopsis lyrata
AL4G41400 10.0kb downstream 10.0kb downstream 13237   true scaffold_4: 20909019-20922255 Arabidopsis lyrata
AL4G41400 10.0kb downstream 10.0kb downstream 10000   false scaffold_4: 20909019-20919018 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379222 5261 Brassicaceae View MSA
123836656 5264 Brassicales-Malvales View MSA
124345629 5266 SBM View MSA
124251480 5268 Malvidae View MSA
124065792 5270 Rosid View MSA
123748183 5271 Pentapetalae View MSA
122794190 5272 Eudicot View MSA
122044026 5273 Angiosperm View MSA
121344650 5274 Embryophyte View MSA
123424100 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain