Gene : AL4G40340 A. lyrata v2.1

Defline:  (1 of 5) PTHR10315:SF34 - E3 UBIQUITIN-PROTEIN LIGASE SINAT3-RELATED Genomic Order:  2715
Name:  ? AL4G40340 Secondary Identifier:  ? PAC:35924228

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7511 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL4G40340 0.5kb upstream 0.5kb upstream 3467   true scaffold_4: 20541661-20545127 Arabidopsis lyrata
AL4G40340 0.5kb upstream 0.5kb upstream 500   false scaffold_4: 20544628-20545127 Arabidopsis lyrata
AL4G40340 0.5kb downstream 0.5kb downstream 3467   true scaffold_4: 20541161-20544627 Arabidopsis lyrata
AL4G40340 0.5kb downstream 0.5kb downstream 500   false scaffold_4: 20541161-20541660 Arabidopsis lyrata
AL4G40340 1.0kb upstream 1.0kb upstream 3967   true scaffold_4: 20541661-20545627 Arabidopsis lyrata
AL4G40340 1.0kb upstream 1.0kb upstream 1000   false scaffold_4: 20544628-20545627 Arabidopsis lyrata
AL4G40340 1.0kb downstream 1.0kb downstream 3967   true scaffold_4: 20540661-20544627 Arabidopsis lyrata
AL4G40340 1.0kb downstream 1.0kb downstream 1000   false scaffold_4: 20540661-20541660 Arabidopsis lyrata
AL4G40340 2.0kb upstream 2.0kb upstream 4967   true scaffold_4: 20541661-20546627 Arabidopsis lyrata
AL4G40340 2.0kb upstream 2.0kb upstream 2000   false scaffold_4: 20544628-20546627 Arabidopsis lyrata
AL4G40340 2.0kb downstream 2.0kb downstream 4967   true scaffold_4: 20539661-20544627 Arabidopsis lyrata
AL4G40340 2.0kb downstream 2.0kb downstream 2000   false scaffold_4: 20539661-20541660 Arabidopsis lyrata
AL4G40340 5.0kb upstream 5.0kb upstream 7967   true scaffold_4: 20541661-20549627 Arabidopsis lyrata
AL4G40340 5.0kb upstream 5.0kb upstream 5000   false scaffold_4: 20544628-20549627 Arabidopsis lyrata
AL4G40340 5.0kb downstream 5.0kb downstream 7967   true scaffold_4: 20536661-20544627 Arabidopsis lyrata
AL4G40340 5.0kb downstream 5.0kb downstream 5000   false scaffold_4: 20536661-20541660 Arabidopsis lyrata
AL4G40340 10.0kb upstream 10.0kb upstream 12967   true scaffold_4: 20541661-20554627 Arabidopsis lyrata
AL4G40340 10.0kb upstream 10.0kb upstream 10000   false scaffold_4: 20544628-20554627 Arabidopsis lyrata
AL4G40340 10.0kb downstream 10.0kb downstream 12967   true scaffold_4: 20531661-20544627 Arabidopsis lyrata
AL4G40340 10.0kb downstream 10.0kb downstream 10000   false scaffold_4: 20531661-20541660 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375440 5261 Brassicaceae View MSA
123800955 5264 Brassicales-Malvales View MSA
124298307 5266 SBM View MSA
124149979 5268 Malvidae View MSA
124072834 5270 Rosid View MSA
123746623 5271 Pentapetalae View MSA
122796827 5272 Eudicot View MSA
122050638 5273 Angiosperm View MSA
121350928 5274 Embryophyte View MSA
123381939 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain