Gene : AL4G44060 A. lyrata v2.1

Defline:  (1 of 1) PTHR23163:SF3 - E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 Genomic Order:  3071
Name:  ? AL4G44060 Secondary Identifier:  ? PAC:35922979

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7511 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL4G44060 0.5kb upstream 0.5kb upstream 7045   true scaffold_4: 21921808-21928852 Arabidopsis lyrata
AL4G44060 0.5kb upstream 0.5kb upstream 500   false scaffold_4: 21928353-21928852 Arabidopsis lyrata
AL4G44060 0.5kb downstream 0.5kb downstream 7045   true scaffold_4: 21921308-21928352 Arabidopsis lyrata
AL4G44060 0.5kb downstream 0.5kb downstream 500   false scaffold_4: 21921308-21921807 Arabidopsis lyrata
AL4G44060 1.0kb upstream 1.0kb upstream 7545   true scaffold_4: 21921808-21929352 Arabidopsis lyrata
AL4G44060 1.0kb upstream 1.0kb upstream 1000   false scaffold_4: 21928353-21929352 Arabidopsis lyrata
AL4G44060 1.0kb downstream 1.0kb downstream 7545   true scaffold_4: 21920808-21928352 Arabidopsis lyrata
AL4G44060 1.0kb downstream 1.0kb downstream 1000   false scaffold_4: 21920808-21921807 Arabidopsis lyrata
AL4G44060 2.0kb upstream 2.0kb upstream 8545   true scaffold_4: 21921808-21930352 Arabidopsis lyrata
AL4G44060 2.0kb upstream 2.0kb upstream 2000   false scaffold_4: 21928353-21930352 Arabidopsis lyrata
AL4G44060 2.0kb downstream 2.0kb downstream 8545   true scaffold_4: 21919808-21928352 Arabidopsis lyrata
AL4G44060 2.0kb downstream 2.0kb downstream 2000   false scaffold_4: 21919808-21921807 Arabidopsis lyrata
AL4G44060 5.0kb upstream 5.0kb upstream 11545   true scaffold_4: 21921808-21933352 Arabidopsis lyrata
AL4G44060 5.0kb upstream 5.0kb upstream 5000   false scaffold_4: 21928353-21933352 Arabidopsis lyrata
AL4G44060 5.0kb downstream 5.0kb downstream 11545   true scaffold_4: 21916808-21928352 Arabidopsis lyrata
AL4G44060 5.0kb downstream 5.0kb downstream 5000   false scaffold_4: 21916808-21921807 Arabidopsis lyrata
AL4G44060 10.0kb upstream 10.0kb upstream 16545   true scaffold_4: 21921808-21938352 Arabidopsis lyrata
AL4G44060 10.0kb upstream 10.0kb upstream 10000   false scaffold_4: 21928353-21938352 Arabidopsis lyrata
AL4G44060 10.0kb downstream 10.0kb downstream 16545   true scaffold_4: 21911808-21928352 Arabidopsis lyrata
AL4G44060 10.0kb downstream 10.0kb downstream 10000   false scaffold_4: 21911808-21921807 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364133 5261 Brassicaceae View MSA
123841035 5264 Brassicales-Malvales View MSA
124344060 5266 SBM View MSA
124251962 5268 Malvidae View MSA
124061906 5270 Rosid View MSA
123753299 5271 Pentapetalae View MSA
122793673 5272 Eudicot View MSA
122042098 5273 Angiosperm View MSA
121349326 5274 Embryophyte View MSA
123423997 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain