Gene : AL4G43560 A. lyrata v2.1

Defline:  (1 of 1) PTHR10210:SF58 - RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 5, CHLOROPLASTIC Genomic Order:  3022
Name:  ? AL4G43560 Secondary Identifier:  ? PAC:35924728

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY0-662 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL4G43560 0.5kb upstream 0.5kb upstream 3008   true scaffold_4: 21720629-21723636 Arabidopsis lyrata
AL4G43560 0.5kb upstream 0.5kb upstream 500   false scaffold_4: 21720629-21721128 Arabidopsis lyrata
AL4G43560 0.5kb downstream 0.5kb downstream 3008   true scaffold_4: 21721129-21724136 Arabidopsis lyrata
AL4G43560 0.5kb downstream 0.5kb downstream 500   false scaffold_4: 21723637-21724136 Arabidopsis lyrata
AL4G43560 1.0kb upstream 1.0kb upstream 3508   true scaffold_4: 21720129-21723636 Arabidopsis lyrata
AL4G43560 1.0kb upstream 1.0kb upstream 1000   false scaffold_4: 21720129-21721128 Arabidopsis lyrata
AL4G43560 1.0kb downstream 1.0kb downstream 3508   true scaffold_4: 21721129-21724636 Arabidopsis lyrata
AL4G43560 1.0kb downstream 1.0kb downstream 1000   false scaffold_4: 21723637-21724636 Arabidopsis lyrata
AL4G43560 2.0kb upstream 2.0kb upstream 4508   true scaffold_4: 21719129-21723636 Arabidopsis lyrata
AL4G43560 2.0kb upstream 2.0kb upstream 2000   false scaffold_4: 21719129-21721128 Arabidopsis lyrata
AL4G43560 2.0kb downstream 2.0kb downstream 4508   true scaffold_4: 21721129-21725636 Arabidopsis lyrata
AL4G43560 2.0kb downstream 2.0kb downstream 2000   false scaffold_4: 21723637-21725636 Arabidopsis lyrata
AL4G43560 5.0kb upstream 5.0kb upstream 7508   true scaffold_4: 21716129-21723636 Arabidopsis lyrata
AL4G43560 5.0kb upstream 5.0kb upstream 5000   false scaffold_4: 21716129-21721128 Arabidopsis lyrata
AL4G43560 5.0kb downstream 5.0kb downstream 7508   true scaffold_4: 21721129-21728636 Arabidopsis lyrata
AL4G43560 5.0kb downstream 5.0kb downstream 5000   false scaffold_4: 21723637-21728636 Arabidopsis lyrata
AL4G43560 10.0kb upstream 10.0kb upstream 12508   true scaffold_4: 21711129-21723636 Arabidopsis lyrata
AL4G43560 10.0kb upstream 10.0kb upstream 10000   false scaffold_4: 21711129-21721128 Arabidopsis lyrata
AL4G43560 10.0kb downstream 10.0kb downstream 12508   true scaffold_4: 21721129-21733636 Arabidopsis lyrata
AL4G43560 10.0kb downstream 10.0kb downstream 10000   false scaffold_4: 21723637-21733636 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361116 5261 Brassicaceae View MSA
123829238 5264 Brassicales-Malvales View MSA
124341490 5266 SBM View MSA
124240392 5268 Malvidae View MSA
124060795 5270 Rosid View MSA
123749025 5271 Pentapetalae View MSA
122788028 5272 Eudicot View MSA
122042217 5273 Angiosperm View MSA
121347994 5274 Embryophyte View MSA
123427852 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain