Gene : AL4G42750 A. lyrata v2.1

Defline:  (1 of 1) PTHR31375:SF18 - POLYGALACTURONASE-RELATED Genomic Order:  2945
Name:  ? AL4G42750 Secondary Identifier:  ? PAC:35922947

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1081 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL4G42750 0.5kb upstream 0.5kb upstream 2248   true scaffold_4: 21417795-21420042 Arabidopsis lyrata
AL4G42750 0.5kb upstream 0.5kb upstream 500   false scaffold_4: 21417795-21418294 Arabidopsis lyrata
AL4G42750 0.5kb downstream 0.5kb downstream 2248   true scaffold_4: 21418295-21420542 Arabidopsis lyrata
AL4G42750 0.5kb downstream 0.5kb downstream 500   false scaffold_4: 21420043-21420542 Arabidopsis lyrata
AL4G42750 1.0kb upstream 1.0kb upstream 2748   true scaffold_4: 21417295-21420042 Arabidopsis lyrata
AL4G42750 1.0kb upstream 1.0kb upstream 1000   false scaffold_4: 21417295-21418294 Arabidopsis lyrata
AL4G42750 1.0kb downstream 1.0kb downstream 2748   true scaffold_4: 21418295-21421042 Arabidopsis lyrata
AL4G42750 1.0kb downstream 1.0kb downstream 1000   false scaffold_4: 21420043-21421042 Arabidopsis lyrata
AL4G42750 2.0kb upstream 2.0kb upstream 3748   true scaffold_4: 21416295-21420042 Arabidopsis lyrata
AL4G42750 2.0kb upstream 2.0kb upstream 2000   false scaffold_4: 21416295-21418294 Arabidopsis lyrata
AL4G42750 2.0kb downstream 2.0kb downstream 3748   true scaffold_4: 21418295-21422042 Arabidopsis lyrata
AL4G42750 2.0kb downstream 2.0kb downstream 2000   false scaffold_4: 21420043-21422042 Arabidopsis lyrata
AL4G42750 5.0kb upstream 5.0kb upstream 6748   true scaffold_4: 21413295-21420042 Arabidopsis lyrata
AL4G42750 5.0kb upstream 5.0kb upstream 5000   false scaffold_4: 21413295-21418294 Arabidopsis lyrata
AL4G42750 5.0kb downstream 5.0kb downstream 6748   true scaffold_4: 21418295-21425042 Arabidopsis lyrata
AL4G42750 5.0kb downstream 5.0kb downstream 5000   false scaffold_4: 21420043-21425042 Arabidopsis lyrata
AL4G42750 10.0kb upstream 10.0kb upstream 11748   true scaffold_4: 21408295-21420042 Arabidopsis lyrata
AL4G42750 10.0kb upstream 10.0kb upstream 10000   false scaffold_4: 21408295-21418294 Arabidopsis lyrata
AL4G42750 10.0kb downstream 10.0kb downstream 11748   true scaffold_4: 21418295-21430042 Arabidopsis lyrata
AL4G42750 10.0kb downstream 10.0kb downstream 10000   false scaffold_4: 21420043-21430042 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367803 5261 Brassicaceae View MSA
123799425 5264 Brassicales-Malvales View MSA
124296947 5266 SBM View MSA
124243771 5268 Malvidae View MSA
124074410 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain