Gene : AL4G46290 A. lyrata v2.1

Defline:  (1 of 2) PTHR33222:SF9 - PROTEIN CURVATURE THYLAKOID 1B, CHLOROPLASTIC Genomic Order:  3287
Name:  ? AL4G46290 Secondary Identifier:  ? PAC:35925388

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PHOTOALL-PWY Arabidopsis lyrata pathologic  
Alyrata PWY-101 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL4G46290 0.5kb upstream 0.5kb upstream 2235   true scaffold_4: 22782240-22784474 Arabidopsis lyrata
AL4G46290 0.5kb upstream 0.5kb upstream 500   false scaffold_4: 22782240-22782739 Arabidopsis lyrata
AL4G46290 0.5kb downstream 0.5kb downstream 2235   true scaffold_4: 22782740-22784974 Arabidopsis lyrata
AL4G46290 0.5kb downstream 0.5kb downstream 500   false scaffold_4: 22784475-22784974 Arabidopsis lyrata
AL4G46290 1.0kb upstream 1.0kb upstream 2735   true scaffold_4: 22781740-22784474 Arabidopsis lyrata
AL4G46290 1.0kb upstream 1.0kb upstream 1000   false scaffold_4: 22781740-22782739 Arabidopsis lyrata
AL4G46290 1.0kb downstream 1.0kb downstream 2735   true scaffold_4: 22782740-22785474 Arabidopsis lyrata
AL4G46290 1.0kb downstream 1.0kb downstream 1000   false scaffold_4: 22784475-22785474 Arabidopsis lyrata
AL4G46290 2.0kb upstream 2.0kb upstream 3735   true scaffold_4: 22780740-22784474 Arabidopsis lyrata
AL4G46290 2.0kb upstream 2.0kb upstream 2000   false scaffold_4: 22780740-22782739 Arabidopsis lyrata
AL4G46290 2.0kb downstream 2.0kb downstream 3735   true scaffold_4: 22782740-22786474 Arabidopsis lyrata
AL4G46290 2.0kb downstream 2.0kb downstream 2000   false scaffold_4: 22784475-22786474 Arabidopsis lyrata
AL4G46290 5.0kb upstream 5.0kb upstream 6735   true scaffold_4: 22777740-22784474 Arabidopsis lyrata
AL4G46290 5.0kb upstream 5.0kb upstream 5000   false scaffold_4: 22777740-22782739 Arabidopsis lyrata
AL4G46290 5.0kb downstream 5.0kb downstream 6735   true scaffold_4: 22782740-22789474 Arabidopsis lyrata
AL4G46290 5.0kb downstream 5.0kb downstream 5000   false scaffold_4: 22784475-22789474 Arabidopsis lyrata
AL4G46290 10.0kb upstream 10.0kb upstream 11735   true scaffold_4: 22772740-22784474 Arabidopsis lyrata
AL4G46290 10.0kb upstream 10.0kb upstream 10000   false scaffold_4: 22772740-22782739 Arabidopsis lyrata
AL4G46290 10.0kb downstream 10.0kb downstream 11735   true scaffold_4: 22782740-22794474 Arabidopsis lyrata
AL4G46290 10.0kb downstream 10.0kb downstream 10000   false scaffold_4: 22784475-22794474 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367981 5261 Brassicaceae View MSA
123829580 5264 Brassicales-Malvales View MSA
124343674 5266 SBM View MSA
124248900 5268 Malvidae View MSA
124068427 5270 Rosid View MSA
123747086 5271 Pentapetalae View MSA
122793406 5272 Eudicot View MSA
122042391 5273 Angiosperm View MSA
121347672 5274 Embryophyte View MSA
123425732 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain