Gene : AL4G45320 A. lyrata v2.1

Defline:  (1 of 1) PTHR12358:SF43 - SPHINGOID LONG-CHAIN BASES KINASE 2, MITOCHONDRIAL Genomic Order:  3194
Name:  ? AL4G45320 Secondary Identifier:  ? PAC:35925289

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7039 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL4G45320 0.5kb upstream 0.5kb upstream 2875   true scaffold_4: 22396384-22399258 Arabidopsis lyrata
AL4G45320 0.5kb upstream 0.5kb upstream 500   false scaffold_4: 22396384-22396883 Arabidopsis lyrata
AL4G45320 0.5kb downstream 0.5kb downstream 2875   true scaffold_4: 22396884-22399758 Arabidopsis lyrata
AL4G45320 0.5kb downstream 0.5kb downstream 500   false scaffold_4: 22399259-22399758 Arabidopsis lyrata
AL4G45320 1.0kb upstream 1.0kb upstream 3375   true scaffold_4: 22395884-22399258 Arabidopsis lyrata
AL4G45320 1.0kb upstream 1.0kb upstream 1000   false scaffold_4: 22395884-22396883 Arabidopsis lyrata
AL4G45320 1.0kb downstream 1.0kb downstream 3375   true scaffold_4: 22396884-22400258 Arabidopsis lyrata
AL4G45320 1.0kb downstream 1.0kb downstream 1000   false scaffold_4: 22399259-22400258 Arabidopsis lyrata
AL4G45320 2.0kb upstream 2.0kb upstream 4375   true scaffold_4: 22394884-22399258 Arabidopsis lyrata
AL4G45320 2.0kb upstream 2.0kb upstream 2000   false scaffold_4: 22394884-22396883 Arabidopsis lyrata
AL4G45320 2.0kb downstream 2.0kb downstream 4375   true scaffold_4: 22396884-22401258 Arabidopsis lyrata
AL4G45320 2.0kb downstream 2.0kb downstream 2000   false scaffold_4: 22399259-22401258 Arabidopsis lyrata
AL4G45320 5.0kb upstream 5.0kb upstream 7375   true scaffold_4: 22391884-22399258 Arabidopsis lyrata
AL4G45320 5.0kb upstream 5.0kb upstream 5000   false scaffold_4: 22391884-22396883 Arabidopsis lyrata
AL4G45320 5.0kb downstream 5.0kb downstream 7375   true scaffold_4: 22396884-22404258 Arabidopsis lyrata
AL4G45320 5.0kb downstream 5.0kb downstream 5000   false scaffold_4: 22399259-22404258 Arabidopsis lyrata
AL4G45320 10.0kb upstream 10.0kb upstream 12375   true scaffold_4: 22386884-22399258 Arabidopsis lyrata
AL4G45320 10.0kb upstream 10.0kb upstream 10000   false scaffold_4: 22386884-22396883 Arabidopsis lyrata
AL4G45320 10.0kb downstream 10.0kb downstream 12375   true scaffold_4: 22396884-22409258 Arabidopsis lyrata
AL4G45320 10.0kb downstream 10.0kb downstream 10000   false scaffold_4: 22399259-22409258 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379587 5261 Brassicaceae View MSA
123830792 5264 Brassicales-Malvales View MSA
124343149 5266 SBM View MSA
124237255 5268 Malvidae View MSA
124062992 5270 Rosid View MSA
123747106 5271 Pentapetalae View MSA
122789016 5272 Eudicot View MSA
122043667 5273 Angiosperm View MSA
121344203 5274 Embryophyte View MSA
123380000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain