Gene : AL5G15490 A. lyrata v2.1

Defline:  (1 of 2) 1.2.1.12//1.2.1.13 - Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) / Triosephosphate dehydrogenase // Glyceraldehyde-3-phosphate dehydrogenase (NADP(+)) (phosphorylating) / Triosephosphate dehydrogenase (NADP+) Genomic Order:  490
Name:  ? AL5G15490 Secondary Identifier:  ? PAC:35918284

Sequence Feature Displayer

Ontology Annotation Displayer

9 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata ANAEROFRUCAT-PWY Arabidopsis lyrata pathologic  
Alyrata ANAGLYCOLYSIS-PWY Arabidopsis lyrata pathologic  
Alyrata CALVIN-PWY Arabidopsis lyrata pathologic  
Alyrata GLUCONEO-PWY Arabidopsis lyrata pathologic  
Alyrata PHOTOALL-PWY Arabidopsis lyrata pathologic  
Alyrata PWY-1042 Arabidopsis lyrata pathologic  
Alyrata PWY-5464 Arabidopsis lyrata pathologic  
Alyrata PWY66-399 Arabidopsis lyrata pathologic  
Alyrata SUCSYN-PWY Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL5G15490 0.5kb upstream 0.5kb upstream 2347   true scaffold_5: 3020432-3022778 Arabidopsis lyrata
AL5G15490 0.5kb upstream 0.5kb upstream 500   false scaffold_5: 3020432-3020931 Arabidopsis lyrata
AL5G15490 0.5kb downstream 0.5kb downstream 2347   true scaffold_5: 3020932-3023278 Arabidopsis lyrata
AL5G15490 0.5kb downstream 0.5kb downstream 500   false scaffold_5: 3022779-3023278 Arabidopsis lyrata
AL5G15490 1.0kb upstream 1.0kb upstream 2847   true scaffold_5: 3019932-3022778 Arabidopsis lyrata
AL5G15490 1.0kb upstream 1.0kb upstream 1000   false scaffold_5: 3019932-3020931 Arabidopsis lyrata
AL5G15490 1.0kb downstream 1.0kb downstream 2847   true scaffold_5: 3020932-3023778 Arabidopsis lyrata
AL5G15490 1.0kb downstream 1.0kb downstream 1000   false scaffold_5: 3022779-3023778 Arabidopsis lyrata
AL5G15490 2.0kb upstream 2.0kb upstream 3847   true scaffold_5: 3018932-3022778 Arabidopsis lyrata
AL5G15490 2.0kb upstream 2.0kb upstream 2000   false scaffold_5: 3018932-3020931 Arabidopsis lyrata
AL5G15490 2.0kb downstream 2.0kb downstream 3847   true scaffold_5: 3020932-3024778 Arabidopsis lyrata
AL5G15490 2.0kb downstream 2.0kb downstream 2000   false scaffold_5: 3022779-3024778 Arabidopsis lyrata
AL5G15490 5.0kb upstream 5.0kb upstream 6847   true scaffold_5: 3015932-3022778 Arabidopsis lyrata
AL5G15490 5.0kb upstream 5.0kb upstream 5000   false scaffold_5: 3015932-3020931 Arabidopsis lyrata
AL5G15490 5.0kb downstream 5.0kb downstream 6847   true scaffold_5: 3020932-3027778 Arabidopsis lyrata
AL5G15490 5.0kb downstream 5.0kb downstream 5000   false scaffold_5: 3022779-3027778 Arabidopsis lyrata
AL5G15490 10.0kb upstream 10.0kb upstream 11847   true scaffold_5: 3010932-3022778 Arabidopsis lyrata
AL5G15490 10.0kb upstream 10.0kb upstream 10000   false scaffold_5: 3010932-3020931 Arabidopsis lyrata
AL5G15490 10.0kb downstream 10.0kb downstream 11847   true scaffold_5: 3020932-3032778 Arabidopsis lyrata
AL5G15490 10.0kb downstream 10.0kb downstream 10000   false scaffold_5: 3022779-3032778 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376732 5261 Brassicaceae View MSA
123837960 5264 Brassicales-Malvales View MSA
124344179 5266 SBM View MSA
124254162 5268 Malvidae View MSA
124061607 5270 Rosid View MSA
123737488 5271 Pentapetalae View MSA
122795007 5272 Eudicot View MSA
122045489 5273 Angiosperm View MSA
121346351 5274 Embryophyte View MSA
123425156 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain