Gene : AL5G19120 A. lyrata v2.1

Defline:  (1 of 3) 5.4.99.5 - Chorismate mutase / Hydroxyphenylpyruvate synthase Genomic Order:  797
Name:  ? AL5G19120 Secondary Identifier:  ? PAC:35918446

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-3461 Arabidopsis lyrata pathologic  
Alyrata PWY-3462 Arabidopsis lyrata pathologic  
Alyrata PWY-3481 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL5G19120 0.5kb upstream 0.5kb upstream 2525   true scaffold_5: 5537054-5539578 Arabidopsis lyrata
AL5G19120 0.5kb upstream 0.5kb upstream 500   false scaffold_5: 5539079-5539578 Arabidopsis lyrata
AL5G19120 0.5kb downstream 0.5kb downstream 2525   true scaffold_5: 5536554-5539078 Arabidopsis lyrata
AL5G19120 0.5kb downstream 0.5kb downstream 500   false scaffold_5: 5536554-5537053 Arabidopsis lyrata
AL5G19120 1.0kb upstream 1.0kb upstream 3025   true scaffold_5: 5537054-5540078 Arabidopsis lyrata
AL5G19120 1.0kb upstream 1.0kb upstream 1000   false scaffold_5: 5539079-5540078 Arabidopsis lyrata
AL5G19120 1.0kb downstream 1.0kb downstream 3025   true scaffold_5: 5536054-5539078 Arabidopsis lyrata
AL5G19120 1.0kb downstream 1.0kb downstream 1000   false scaffold_5: 5536054-5537053 Arabidopsis lyrata
AL5G19120 2.0kb upstream 2.0kb upstream 4025   true scaffold_5: 5537054-5541078 Arabidopsis lyrata
AL5G19120 2.0kb upstream 2.0kb upstream 2000   false scaffold_5: 5539079-5541078 Arabidopsis lyrata
AL5G19120 2.0kb downstream 2.0kb downstream 4025   true scaffold_5: 5535054-5539078 Arabidopsis lyrata
AL5G19120 2.0kb downstream 2.0kb downstream 2000   false scaffold_5: 5535054-5537053 Arabidopsis lyrata
AL5G19120 5.0kb upstream 5.0kb upstream 7025   true scaffold_5: 5537054-5544078 Arabidopsis lyrata
AL5G19120 5.0kb upstream 5.0kb upstream 5000   false scaffold_5: 5539079-5544078 Arabidopsis lyrata
AL5G19120 5.0kb downstream 5.0kb downstream 7025   true scaffold_5: 5532054-5539078 Arabidopsis lyrata
AL5G19120 5.0kb downstream 5.0kb downstream 5000   false scaffold_5: 5532054-5537053 Arabidopsis lyrata
AL5G19120 10.0kb upstream 10.0kb upstream 12025   true scaffold_5: 5537054-5549078 Arabidopsis lyrata
AL5G19120 10.0kb upstream 10.0kb upstream 10000   false scaffold_5: 5539079-5549078 Arabidopsis lyrata
AL5G19120 10.0kb downstream 10.0kb downstream 12025   true scaffold_5: 5527054-5539078 Arabidopsis lyrata
AL5G19120 10.0kb downstream 10.0kb downstream 10000   false scaffold_5: 5527054-5537053 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041201 5273 Angiosperm View MSA
122372904 5261 Brassicaceae View MSA
123828372 5264 Brassicales-Malvales View MSA
124336779 5266 SBM View MSA
124252605 5268 Malvidae View MSA
124071158 5270 Rosid View MSA
123736644 5271 Pentapetalae View MSA
122792454 5272 Eudicot View MSA
121347234 5274 Embryophyte View MSA
123427559 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain