Gene : AL5G27130 A. lyrata v2.1

Defline:  (1 of 12) 1.3.5.1 - Succinate dehydrogenase (quinone) / Succinic dehydrogenase Genomic Order:  1470
Name:  ? AL5G27130 Secondary Identifier:  ? PAC:35919079

Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-3781 Arabidopsis lyrata pathologic  
Alyrata PWY-4302 Arabidopsis lyrata pathologic  
Alyrata PWY-5464 Arabidopsis lyrata pathologic  
Alyrata PWY-561 Arabidopsis lyrata pathologic  
Alyrata PWY-5690 Arabidopsis lyrata pathologic  
Alyrata PWY-7279 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL5G27130 0.5kb upstream 0.5kb upstream 1941   true scaffold_5: 13482956-13484896 Arabidopsis lyrata
AL5G27130 0.5kb upstream 0.5kb upstream 500   false scaffold_5: 13482956-13483455 Arabidopsis lyrata
AL5G27130 0.5kb downstream 0.5kb downstream 1941   true scaffold_5: 13483456-13485396 Arabidopsis lyrata
AL5G27130 0.5kb downstream 0.5kb downstream 500   false scaffold_5: 13484897-13485396 Arabidopsis lyrata
AL5G27130 1.0kb upstream 1.0kb upstream 2441   true scaffold_5: 13482456-13484896 Arabidopsis lyrata
AL5G27130 1.0kb upstream 1.0kb upstream 1000   false scaffold_5: 13482456-13483455 Arabidopsis lyrata
AL5G27130 1.0kb downstream 1.0kb downstream 2441   true scaffold_5: 13483456-13485896 Arabidopsis lyrata
AL5G27130 1.0kb downstream 1.0kb downstream 1000   false scaffold_5: 13484897-13485896 Arabidopsis lyrata
AL5G27130 2.0kb upstream 2.0kb upstream 3441   true scaffold_5: 13481456-13484896 Arabidopsis lyrata
AL5G27130 2.0kb upstream 2.0kb upstream 2000   false scaffold_5: 13481456-13483455 Arabidopsis lyrata
AL5G27130 2.0kb downstream 2.0kb downstream 3441   true scaffold_5: 13483456-13486896 Arabidopsis lyrata
AL5G27130 2.0kb downstream 2.0kb downstream 2000   false scaffold_5: 13484897-13486896 Arabidopsis lyrata
AL5G27130 5.0kb upstream 5.0kb upstream 6441   true scaffold_5: 13478456-13484896 Arabidopsis lyrata
AL5G27130 5.0kb upstream 5.0kb upstream 5000   false scaffold_5: 13478456-13483455 Arabidopsis lyrata
AL5G27130 5.0kb downstream 5.0kb downstream 6441   true scaffold_5: 13483456-13489896 Arabidopsis lyrata
AL5G27130 5.0kb downstream 5.0kb downstream 5000   false scaffold_5: 13484897-13489896 Arabidopsis lyrata
AL5G27130 10.0kb upstream 10.0kb upstream 11441   true scaffold_5: 13473456-13484896 Arabidopsis lyrata
AL5G27130 10.0kb upstream 10.0kb upstream 10000   false scaffold_5: 13473456-13483455 Arabidopsis lyrata
AL5G27130 10.0kb downstream 10.0kb downstream 11441   true scaffold_5: 13483456-13494896 Arabidopsis lyrata
AL5G27130 10.0kb downstream 10.0kb downstream 10000   false scaffold_5: 13484897-13494896 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380365 5261 Brassicaceae View MSA
123827409 5264 Brassicales-Malvales View MSA
124342767 5266 SBM View MSA
124236877 5268 Malvidae View MSA
124067632 5270 Rosid View MSA
123745079 5271 Pentapetalae View MSA
122786270 5272 Eudicot View MSA
122044118 5273 Angiosperm View MSA
121344949 5274 Embryophyte View MSA
123380132 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain