Gene : AL5G27500 A. lyrata v2.1

Defline:  (1 of 2) 1.2.1.8 - Betaine-aldehyde dehydrogenase / Betaine aldehyde oxidase Genomic Order:  1504
Name:  ? AL5G27500 Secondary Identifier:  ? PAC:35921588

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY1F-353 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL5G27500 0.5kb upstream 0.5kb upstream 4390   true scaffold_5: 13635792-13640181 Arabidopsis lyrata
AL5G27500 0.5kb upstream 0.5kb upstream 500   false scaffold_5: 13639682-13640181 Arabidopsis lyrata
AL5G27500 0.5kb downstream 0.5kb downstream 4390   true scaffold_5: 13635292-13639681 Arabidopsis lyrata
AL5G27500 0.5kb downstream 0.5kb downstream 500   false scaffold_5: 13635292-13635791 Arabidopsis lyrata
AL5G27500 1.0kb upstream 1.0kb upstream 4890   true scaffold_5: 13635792-13640681 Arabidopsis lyrata
AL5G27500 1.0kb upstream 1.0kb upstream 1000   false scaffold_5: 13639682-13640681 Arabidopsis lyrata
AL5G27500 1.0kb downstream 1.0kb downstream 4890   true scaffold_5: 13634792-13639681 Arabidopsis lyrata
AL5G27500 1.0kb downstream 1.0kb downstream 1000   false scaffold_5: 13634792-13635791 Arabidopsis lyrata
AL5G27500 2.0kb upstream 2.0kb upstream 5890   true scaffold_5: 13635792-13641681 Arabidopsis lyrata
AL5G27500 2.0kb upstream 2.0kb upstream 2000   false scaffold_5: 13639682-13641681 Arabidopsis lyrata
AL5G27500 2.0kb downstream 2.0kb downstream 5890   true scaffold_5: 13633792-13639681 Arabidopsis lyrata
AL5G27500 2.0kb downstream 2.0kb downstream 2000   false scaffold_5: 13633792-13635791 Arabidopsis lyrata
AL5G27500 5.0kb upstream 5.0kb upstream 8890   true scaffold_5: 13635792-13644681 Arabidopsis lyrata
AL5G27500 5.0kb upstream 5.0kb upstream 5000   false scaffold_5: 13639682-13644681 Arabidopsis lyrata
AL5G27500 5.0kb downstream 5.0kb downstream 8890   true scaffold_5: 13630792-13639681 Arabidopsis lyrata
AL5G27500 5.0kb downstream 5.0kb downstream 5000   false scaffold_5: 13630792-13635791 Arabidopsis lyrata
AL5G27500 10.0kb upstream 10.0kb upstream 13890   true scaffold_5: 13635792-13649681 Arabidopsis lyrata
AL5G27500 10.0kb upstream 10.0kb upstream 10000   false scaffold_5: 13639682-13649681 Arabidopsis lyrata
AL5G27500 10.0kb downstream 10.0kb downstream 13890   true scaffold_5: 13625792-13639681 Arabidopsis lyrata
AL5G27500 10.0kb downstream 10.0kb downstream 10000   false scaffold_5: 13625792-13635791 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368114 5261 Brassicaceae View MSA
123799492 5264 Brassicales-Malvales View MSA
124297008 5266 SBM View MSA
124244269 5268 Malvidae View MSA
124063957 5270 Rosid View MSA
123742074 5271 Pentapetalae View MSA
122792963 5272 Eudicot View MSA
122042877 5273 Angiosperm View MSA
121345365 5274 Embryophyte View MSA
123427690 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain