Gene : AL5G28940 A. lyrata v2.1

Defline:  (1 of 2) PTHR31707:SF8 - PECTINESTERASE/PECTINESTERASE INHIBITOR 34-RELATED Genomic Order:  1637
Name:  ? AL5G28940 Secondary Identifier:  ? PAC:35920226

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1081 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL5G28940 0.5kb upstream 0.5kb upstream 4962   true scaffold_5: 14363738-14368699 Arabidopsis lyrata
AL5G28940 0.5kb upstream 0.5kb upstream 500   false scaffold_5: 14363738-14364237 Arabidopsis lyrata
AL5G28940 0.5kb downstream 0.5kb downstream 4962   true scaffold_5: 14364238-14369199 Arabidopsis lyrata
AL5G28940 0.5kb downstream 0.5kb downstream 500   false scaffold_5: 14368700-14369199 Arabidopsis lyrata
AL5G28940 1.0kb upstream 1.0kb upstream 5462   true scaffold_5: 14363238-14368699 Arabidopsis lyrata
AL5G28940 1.0kb upstream 1.0kb upstream 1000   false scaffold_5: 14363238-14364237 Arabidopsis lyrata
AL5G28940 1.0kb downstream 1.0kb downstream 5462   true scaffold_5: 14364238-14369699 Arabidopsis lyrata
AL5G28940 1.0kb downstream 1.0kb downstream 1000   false scaffold_5: 14368700-14369699 Arabidopsis lyrata
AL5G28940 2.0kb upstream 2.0kb upstream 6462   true scaffold_5: 14362238-14368699 Arabidopsis lyrata
AL5G28940 2.0kb upstream 2.0kb upstream 2000   false scaffold_5: 14362238-14364237 Arabidopsis lyrata
AL5G28940 2.0kb downstream 2.0kb downstream 6462   true scaffold_5: 14364238-14370699 Arabidopsis lyrata
AL5G28940 2.0kb downstream 2.0kb downstream 2000   false scaffold_5: 14368700-14370699 Arabidopsis lyrata
AL5G28940 5.0kb upstream 5.0kb upstream 9462   true scaffold_5: 14359238-14368699 Arabidopsis lyrata
AL5G28940 5.0kb upstream 5.0kb upstream 5000   false scaffold_5: 14359238-14364237 Arabidopsis lyrata
AL5G28940 5.0kb downstream 5.0kb downstream 9462   true scaffold_5: 14364238-14373699 Arabidopsis lyrata
AL5G28940 5.0kb downstream 5.0kb downstream 5000   false scaffold_5: 14368700-14373699 Arabidopsis lyrata
AL5G28940 10.0kb upstream 10.0kb upstream 14462   true scaffold_5: 14354238-14368699 Arabidopsis lyrata
AL5G28940 10.0kb upstream 10.0kb upstream 10000   false scaffold_5: 14354238-14364237 Arabidopsis lyrata
AL5G28940 10.0kb downstream 10.0kb downstream 14462   true scaffold_5: 14364238-14378699 Arabidopsis lyrata
AL5G28940 10.0kb downstream 10.0kb downstream 10000   false scaffold_5: 14368700-14378699 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381406 5261 Brassicaceae View MSA
123838000 5264 Brassicales-Malvales View MSA
124337628 5266 SBM View MSA
124239188 5268 Malvidae View MSA
124065220 5270 Rosid View MSA
123746199 5271 Pentapetalae View MSA
122794152 5272 Eudicot View MSA
122043800 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain