Gene : AL5G34060 A. lyrata v2.1

Defline:  (1 of 1) PTHR20852:SF16 - TYPE-1 GLUTAMINE SYNTHETASE 1 Genomic Order:  2113
Name:  ? AL5G34060 Secondary Identifier:  ? PAC:35920077

Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata GLNSYN-PWY Arabidopsis lyrata pathologic  
Alyrata PWY-3282 Arabidopsis lyrata pathologic  
Alyrata PWY-381 Arabidopsis lyrata pathologic  
Alyrata PWY-6549 Arabidopsis lyrata pathologic  
Alyrata PWY-6963 Arabidopsis lyrata pathologic  
Alyrata PWY-6964 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL5G34060 0.5kb upstream 0.5kb upstream 5078   true scaffold_5: 16457567-16462644 Arabidopsis lyrata
AL5G34060 0.5kb upstream 0.5kb upstream 500   false scaffold_5: 16457567-16458066 Arabidopsis lyrata
AL5G34060 0.5kb downstream 0.5kb downstream 5078   true scaffold_5: 16458067-16463144 Arabidopsis lyrata
AL5G34060 0.5kb downstream 0.5kb downstream 500   false scaffold_5: 16462645-16463144 Arabidopsis lyrata
AL5G34060 1.0kb upstream 1.0kb upstream 5578   true scaffold_5: 16457067-16462644 Arabidopsis lyrata
AL5G34060 1.0kb upstream 1.0kb upstream 1000   false scaffold_5: 16457067-16458066 Arabidopsis lyrata
AL5G34060 1.0kb downstream 1.0kb downstream 5578   true scaffold_5: 16458067-16463644 Arabidopsis lyrata
AL5G34060 1.0kb downstream 1.0kb downstream 1000   false scaffold_5: 16462645-16463644 Arabidopsis lyrata
AL5G34060 2.0kb upstream 2.0kb upstream 6578   true scaffold_5: 16456067-16462644 Arabidopsis lyrata
AL5G34060 2.0kb upstream 2.0kb upstream 2000   false scaffold_5: 16456067-16458066 Arabidopsis lyrata
AL5G34060 2.0kb downstream 2.0kb downstream 6578   true scaffold_5: 16458067-16464644 Arabidopsis lyrata
AL5G34060 2.0kb downstream 2.0kb downstream 2000   false scaffold_5: 16462645-16464644 Arabidopsis lyrata
AL5G34060 5.0kb upstream 5.0kb upstream 9578   true scaffold_5: 16453067-16462644 Arabidopsis lyrata
AL5G34060 5.0kb upstream 5.0kb upstream 5000   false scaffold_5: 16453067-16458066 Arabidopsis lyrata
AL5G34060 5.0kb downstream 5.0kb downstream 9578   true scaffold_5: 16458067-16467644 Arabidopsis lyrata
AL5G34060 5.0kb downstream 5.0kb downstream 5000   false scaffold_5: 16462645-16467644 Arabidopsis lyrata
AL5G34060 10.0kb upstream 10.0kb upstream 14578   true scaffold_5: 16448067-16462644 Arabidopsis lyrata
AL5G34060 10.0kb upstream 10.0kb upstream 10000   false scaffold_5: 16448067-16458066 Arabidopsis lyrata
AL5G34060 10.0kb downstream 10.0kb downstream 14578   true scaffold_5: 16458067-16472644 Arabidopsis lyrata
AL5G34060 10.0kb downstream 10.0kb downstream 10000   false scaffold_5: 16462645-16472644 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370921 5261 Brassicaceae View MSA
123830288 5264 Brassicales-Malvales View MSA
124344097 5266 SBM View MSA
124252817 5268 Malvidae View MSA
124062784 5270 Rosid View MSA
123749163 5271 Pentapetalae View MSA
122791802 5272 Eudicot View MSA
122046045 5273 Angiosperm View MSA
121348529 5274 Embryophyte View MSA
123428524 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain