Gene : AL5G36400 A. lyrata v2.1

Defline:  (1 of 3) K12373 - hexosaminidase (HEXA_B) Genomic Order:  2341
Name:  ? AL5G36400 Secondary Identifier:  ? PAC:35918630

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-6902 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL5G36400 0.5kb upstream 0.5kb upstream 4793   true scaffold_5: 17391871-17396663 Arabidopsis lyrata
AL5G36400 0.5kb upstream 0.5kb upstream 500   false scaffold_5: 17391871-17392370 Arabidopsis lyrata
AL5G36400 0.5kb downstream 0.5kb downstream 4793   true scaffold_5: 17392371-17397163 Arabidopsis lyrata
AL5G36400 0.5kb downstream 0.5kb downstream 500   false scaffold_5: 17396664-17397163 Arabidopsis lyrata
AL5G36400 1.0kb upstream 1.0kb upstream 5293   true scaffold_5: 17391371-17396663 Arabidopsis lyrata
AL5G36400 1.0kb upstream 1.0kb upstream 1000   false scaffold_5: 17391371-17392370 Arabidopsis lyrata
AL5G36400 1.0kb downstream 1.0kb downstream 5293   true scaffold_5: 17392371-17397663 Arabidopsis lyrata
AL5G36400 1.0kb downstream 1.0kb downstream 1000   false scaffold_5: 17396664-17397663 Arabidopsis lyrata
AL5G36400 2.0kb upstream 2.0kb upstream 6293   true scaffold_5: 17390371-17396663 Arabidopsis lyrata
AL5G36400 2.0kb upstream 2.0kb upstream 2000   false scaffold_5: 17390371-17392370 Arabidopsis lyrata
AL5G36400 2.0kb downstream 2.0kb downstream 6293   true scaffold_5: 17392371-17398663 Arabidopsis lyrata
AL5G36400 2.0kb downstream 2.0kb downstream 2000   false scaffold_5: 17396664-17398663 Arabidopsis lyrata
AL5G36400 5.0kb upstream 5.0kb upstream 9293   true scaffold_5: 17387371-17396663 Arabidopsis lyrata
AL5G36400 5.0kb upstream 5.0kb upstream 5000   false scaffold_5: 17387371-17392370 Arabidopsis lyrata
AL5G36400 5.0kb downstream 5.0kb downstream 9293   true scaffold_5: 17392371-17401663 Arabidopsis lyrata
AL5G36400 5.0kb downstream 5.0kb downstream 5000   false scaffold_5: 17396664-17401663 Arabidopsis lyrata
AL5G36400 10.0kb upstream 10.0kb upstream 14293   true scaffold_5: 17382371-17396663 Arabidopsis lyrata
AL5G36400 10.0kb upstream 10.0kb upstream 10000   false scaffold_5: 17382371-17392370 Arabidopsis lyrata
AL5G36400 10.0kb downstream 10.0kb downstream 14293   true scaffold_5: 17392371-17406663 Arabidopsis lyrata
AL5G36400 10.0kb downstream 10.0kb downstream 10000   false scaffold_5: 17396664-17406663 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361854 5261 Brassicaceae View MSA
123827865 5264 Brassicales-Malvales View MSA
124345307 5266 SBM View MSA
124237897 5268 Malvidae View MSA
124068580 5270 Rosid View MSA
123738133 5271 Pentapetalae View MSA
122790534 5272 Eudicot View MSA
122047167 5273 Angiosperm View MSA
121346826 5274 Embryophyte View MSA
123428053 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain