Gene : AL5G39100 A. lyrata v2.1

Defline:  (1 of 4) K06617 - raffinose synthase (E2.4.1.82) Genomic Order:  2598
Name:  ? AL5G39100 Secondary Identifier:  ? PAC:35919233

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-5337 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

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Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL5G39100 0.5kb upstream 0.5kb upstream 4927   true scaffold_5: 18446153-18451079 Arabidopsis lyrata
AL5G39100 0.5kb upstream 0.5kb upstream 500   false scaffold_5: 18450580-18451079 Arabidopsis lyrata
AL5G39100 0.5kb downstream 0.5kb downstream 4927   true scaffold_5: 18445653-18450579 Arabidopsis lyrata
AL5G39100 0.5kb downstream 0.5kb downstream 500   false scaffold_5: 18445653-18446152 Arabidopsis lyrata
AL5G39100 1.0kb upstream 1.0kb upstream 5427   true scaffold_5: 18446153-18451579 Arabidopsis lyrata
AL5G39100 1.0kb upstream 1.0kb upstream 1000   false scaffold_5: 18450580-18451579 Arabidopsis lyrata
AL5G39100 1.0kb downstream 1.0kb downstream 5427   true scaffold_5: 18445153-18450579 Arabidopsis lyrata
AL5G39100 1.0kb downstream 1.0kb downstream 1000   false scaffold_5: 18445153-18446152 Arabidopsis lyrata
AL5G39100 2.0kb upstream 2.0kb upstream 6427   true scaffold_5: 18446153-18452579 Arabidopsis lyrata
AL5G39100 2.0kb upstream 2.0kb upstream 2000   false scaffold_5: 18450580-18452579 Arabidopsis lyrata
AL5G39100 2.0kb downstream 2.0kb downstream 6427   true scaffold_5: 18444153-18450579 Arabidopsis lyrata
AL5G39100 2.0kb downstream 2.0kb downstream 2000   false scaffold_5: 18444153-18446152 Arabidopsis lyrata
AL5G39100 5.0kb upstream 5.0kb upstream 9427   true scaffold_5: 18446153-18455579 Arabidopsis lyrata
AL5G39100 5.0kb upstream 5.0kb upstream 5000   false scaffold_5: 18450580-18455579 Arabidopsis lyrata
AL5G39100 5.0kb downstream 5.0kb downstream 9427   true scaffold_5: 18441153-18450579 Arabidopsis lyrata
AL5G39100 5.0kb downstream 5.0kb downstream 5000   false scaffold_5: 18441153-18446152 Arabidopsis lyrata
AL5G39100 10.0kb upstream 10.0kb upstream 14427   true scaffold_5: 18446153-18460579 Arabidopsis lyrata
AL5G39100 10.0kb upstream 10.0kb upstream 10000   false scaffold_5: 18450580-18460579 Arabidopsis lyrata
AL5G39100 10.0kb downstream 10.0kb downstream 14427   true scaffold_5: 18436153-18450579 Arabidopsis lyrata
AL5G39100 10.0kb downstream 10.0kb downstream 10000   false scaffold_5: 18436153-18446152 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372052 5261 Brassicaceae View MSA
123831242 5264 Brassicales-Malvales View MSA
124344017 5266 SBM View MSA
124249240 5268 Malvidae View MSA
124064190 5270 Rosid View MSA
123740319 5271 Pentapetalae View MSA
122793686 5272 Eudicot View MSA
122044208 5273 Angiosperm View MSA
123429020 5275 Viridiplantae View MSA
121345613 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain