Gene : AL5G40890 A. lyrata v2.1

Defline:  (1 of 2) PTHR31707:SF29 - PECTINESTERASE/PECTINESTERASE INHIBITOR 16-RELATED Genomic Order:  2770
Name:  ? AL5G40890 Secondary Identifier:  ? PAC:35919184

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1081 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL5G40890 0.5kb upstream 0.5kb upstream 2482   true scaffold_5: 19144334-19146815 Arabidopsis lyrata
AL5G40890 0.5kb upstream 0.5kb upstream 500   false scaffold_5: 19146316-19146815 Arabidopsis lyrata
AL5G40890 0.5kb downstream 0.5kb downstream 2482   true scaffold_5: 19143834-19146315 Arabidopsis lyrata
AL5G40890 0.5kb downstream 0.5kb downstream 500   false scaffold_5: 19143834-19144333 Arabidopsis lyrata
AL5G40890 1.0kb upstream 1.0kb upstream 2982   true scaffold_5: 19144334-19147315 Arabidopsis lyrata
AL5G40890 1.0kb upstream 1.0kb upstream 1000   false scaffold_5: 19146316-19147315 Arabidopsis lyrata
AL5G40890 1.0kb downstream 1.0kb downstream 2982   true scaffold_5: 19143334-19146315 Arabidopsis lyrata
AL5G40890 1.0kb downstream 1.0kb downstream 1000   false scaffold_5: 19143334-19144333 Arabidopsis lyrata
AL5G40890 2.0kb upstream 2.0kb upstream 3982   true scaffold_5: 19144334-19148315 Arabidopsis lyrata
AL5G40890 2.0kb upstream 2.0kb upstream 2000   false scaffold_5: 19146316-19148315 Arabidopsis lyrata
AL5G40890 2.0kb downstream 2.0kb downstream 3982   true scaffold_5: 19142334-19146315 Arabidopsis lyrata
AL5G40890 2.0kb downstream 2.0kb downstream 2000   false scaffold_5: 19142334-19144333 Arabidopsis lyrata
AL5G40890 5.0kb upstream 5.0kb upstream 6982   true scaffold_5: 19144334-19151315 Arabidopsis lyrata
AL5G40890 5.0kb upstream 5.0kb upstream 5000   false scaffold_5: 19146316-19151315 Arabidopsis lyrata
AL5G40890 5.0kb downstream 5.0kb downstream 6982   true scaffold_5: 19139334-19146315 Arabidopsis lyrata
AL5G40890 5.0kb downstream 5.0kb downstream 5000   false scaffold_5: 19139334-19144333 Arabidopsis lyrata
AL5G40890 10.0kb upstream 10.0kb upstream 11982   true scaffold_5: 19144334-19156315 Arabidopsis lyrata
AL5G40890 10.0kb upstream 10.0kb upstream 10000   false scaffold_5: 19146316-19156315 Arabidopsis lyrata
AL5G40890 10.0kb downstream 10.0kb downstream 11982   true scaffold_5: 19134334-19146315 Arabidopsis lyrata
AL5G40890 10.0kb downstream 10.0kb downstream 10000   false scaffold_5: 19134334-19144333 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379817 5261 Brassicaceae View MSA
123802432 5264 Brassicales-Malvales View MSA
124299627 5266 SBM View MSA
124252795 5268 Malvidae View MSA
124068551 5270 Rosid View MSA
123627858 5271 Pentapetalae View MSA
122790137 5272 Eudicot View MSA
122051530 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain