Gene : AL5G43670 A. lyrata v2.1

Defline:  (1 of 6) PTHR22849:SF50 - U-BOX DOMAIN-CONTAINING PROTEIN 36-RELATED Genomic Order:  3025
Name:  ? AL5G43670 Secondary Identifier:  ? PAC:35918512

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7511 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL5G43670 0.5kb upstream 0.5kb upstream 2556   true scaffold_5: 20233229-20235784 Arabidopsis lyrata
AL5G43670 0.5kb upstream 0.5kb upstream 500   false scaffold_5: 20233229-20233728 Arabidopsis lyrata
AL5G43670 0.5kb downstream 0.5kb downstream 2556   true scaffold_5: 20233729-20236284 Arabidopsis lyrata
AL5G43670 0.5kb downstream 0.5kb downstream 500   false scaffold_5: 20235785-20236284 Arabidopsis lyrata
AL5G43670 1.0kb upstream 1.0kb upstream 3056   true scaffold_5: 20232729-20235784 Arabidopsis lyrata
AL5G43670 1.0kb upstream 1.0kb upstream 1000   false scaffold_5: 20232729-20233728 Arabidopsis lyrata
AL5G43670 1.0kb downstream 1.0kb downstream 3056   true scaffold_5: 20233729-20236784 Arabidopsis lyrata
AL5G43670 1.0kb downstream 1.0kb downstream 1000   false scaffold_5: 20235785-20236784 Arabidopsis lyrata
AL5G43670 2.0kb upstream 2.0kb upstream 4056   true scaffold_5: 20231729-20235784 Arabidopsis lyrata
AL5G43670 2.0kb upstream 2.0kb upstream 2000   false scaffold_5: 20231729-20233728 Arabidopsis lyrata
AL5G43670 2.0kb downstream 2.0kb downstream 4056   true scaffold_5: 20233729-20237784 Arabidopsis lyrata
AL5G43670 2.0kb downstream 2.0kb downstream 2000   false scaffold_5: 20235785-20237784 Arabidopsis lyrata
AL5G43670 5.0kb upstream 5.0kb upstream 7056   true scaffold_5: 20228729-20235784 Arabidopsis lyrata
AL5G43670 5.0kb upstream 5.0kb upstream 5000   false scaffold_5: 20228729-20233728 Arabidopsis lyrata
AL5G43670 5.0kb downstream 5.0kb downstream 7056   true scaffold_5: 20233729-20240784 Arabidopsis lyrata
AL5G43670 5.0kb downstream 5.0kb downstream 5000   false scaffold_5: 20235785-20240784 Arabidopsis lyrata
AL5G43670 10.0kb upstream 10.0kb upstream 12056   true scaffold_5: 20223729-20235784 Arabidopsis lyrata
AL5G43670 10.0kb upstream 10.0kb upstream 10000   false scaffold_5: 20223729-20233728 Arabidopsis lyrata
AL5G43670 10.0kb downstream 10.0kb downstream 12056   true scaffold_5: 20233729-20245784 Arabidopsis lyrata
AL5G43670 10.0kb downstream 10.0kb downstream 10000   false scaffold_5: 20235785-20245784 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028010 5273 Angiosperm View MSA
122373568 5261 Brassicaceae View MSA
123800579 5264 Brassicales-Malvales View MSA
124297980 5266 SBM View MSA
124252290 5268 Malvidae View MSA
124050747 5270 Rosid View MSA
123742120 5271 Pentapetalae View MSA
122770207 5272 Eudicot View MSA
121297566 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain