Gene : AL5G43030 A. lyrata v2.1

Defline:  (1 of 1) PTHR31707:SF35 - PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED Genomic Order:  2965
Name:  ? AL5G43030 Secondary Identifier:  ? PAC:35919254

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1081 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL5G43030 0.5kb upstream 0.5kb upstream 3040   true scaffold_5: 20022387-20025426 Arabidopsis lyrata
AL5G43030 0.5kb upstream 0.5kb upstream 500   false scaffold_5: 20022387-20022886 Arabidopsis lyrata
AL5G43030 0.5kb downstream 0.5kb downstream 3040   true scaffold_5: 20022887-20025926 Arabidopsis lyrata
AL5G43030 0.5kb downstream 0.5kb downstream 500   false scaffold_5: 20025427-20025926 Arabidopsis lyrata
AL5G43030 1.0kb upstream 1.0kb upstream 3540   true scaffold_5: 20021887-20025426 Arabidopsis lyrata
AL5G43030 1.0kb upstream 1.0kb upstream 1000   false scaffold_5: 20021887-20022886 Arabidopsis lyrata
AL5G43030 1.0kb downstream 1.0kb downstream 3540   true scaffold_5: 20022887-20026426 Arabidopsis lyrata
AL5G43030 1.0kb downstream 1.0kb downstream 1000   false scaffold_5: 20025427-20026426 Arabidopsis lyrata
AL5G43030 2.0kb upstream 2.0kb upstream 4540   true scaffold_5: 20020887-20025426 Arabidopsis lyrata
AL5G43030 2.0kb upstream 2.0kb upstream 2000   false scaffold_5: 20020887-20022886 Arabidopsis lyrata
AL5G43030 2.0kb downstream 2.0kb downstream 4540   true scaffold_5: 20022887-20027426 Arabidopsis lyrata
AL5G43030 2.0kb downstream 2.0kb downstream 2000   false scaffold_5: 20025427-20027426 Arabidopsis lyrata
AL5G43030 5.0kb upstream 5.0kb upstream 7540   true scaffold_5: 20017887-20025426 Arabidopsis lyrata
AL5G43030 5.0kb upstream 5.0kb upstream 5000   false scaffold_5: 20017887-20022886 Arabidopsis lyrata
AL5G43030 5.0kb downstream 5.0kb downstream 7540   true scaffold_5: 20022887-20030426 Arabidopsis lyrata
AL5G43030 5.0kb downstream 5.0kb downstream 5000   false scaffold_5: 20025427-20030426 Arabidopsis lyrata
AL5G43030 10.0kb upstream 10.0kb upstream 12540   true scaffold_5: 20012887-20025426 Arabidopsis lyrata
AL5G43030 10.0kb upstream 10.0kb upstream 10000   false scaffold_5: 20012887-20022886 Arabidopsis lyrata
AL5G43030 10.0kb downstream 10.0kb downstream 12540   true scaffold_5: 20022887-20035426 Arabidopsis lyrata
AL5G43030 10.0kb downstream 10.0kb downstream 10000   false scaffold_5: 20025427-20035426 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367115 5261 Brassicaceae View MSA
123829161 5264 Brassicales-Malvales View MSA
124350444 5266 SBM View MSA
124244042 5268 Malvidae View MSA
124073271 5270 Rosid View MSA
123752785 5271 Pentapetalae View MSA
122796250 5272 Eudicot View MSA
122050958 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain