Gene : AL5G41970 A. lyrata v2.1

Defline:  (1 of 5) K01184 - polygalacturonase (E3.2.1.15) Genomic Order:  2870
Name:  ? AL5G41970 Secondary Identifier:  ? PAC:35920603

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1081 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL5G41970 0.5kb upstream 0.5kb upstream 2939   true scaffold_5: 19553542-19556480 Arabidopsis lyrata
AL5G41970 0.5kb upstream 0.5kb upstream 500   false scaffold_5: 19555981-19556480 Arabidopsis lyrata
AL5G41970 0.5kb downstream 0.5kb downstream 2939   true scaffold_5: 19553042-19555980 Arabidopsis lyrata
AL5G41970 0.5kb downstream 0.5kb downstream 500   false scaffold_5: 19553042-19553541 Arabidopsis lyrata
AL5G41970 1.0kb upstream 1.0kb upstream 3439   true scaffold_5: 19553542-19556980 Arabidopsis lyrata
AL5G41970 1.0kb upstream 1.0kb upstream 1000   false scaffold_5: 19555981-19556980 Arabidopsis lyrata
AL5G41970 1.0kb downstream 1.0kb downstream 3439   true scaffold_5: 19552542-19555980 Arabidopsis lyrata
AL5G41970 1.0kb downstream 1.0kb downstream 1000   false scaffold_5: 19552542-19553541 Arabidopsis lyrata
AL5G41970 2.0kb upstream 2.0kb upstream 4439   true scaffold_5: 19553542-19557980 Arabidopsis lyrata
AL5G41970 2.0kb upstream 2.0kb upstream 2000   false scaffold_5: 19555981-19557980 Arabidopsis lyrata
AL5G41970 2.0kb downstream 2.0kb downstream 4439   true scaffold_5: 19551542-19555980 Arabidopsis lyrata
AL5G41970 2.0kb downstream 2.0kb downstream 2000   false scaffold_5: 19551542-19553541 Arabidopsis lyrata
AL5G41970 5.0kb upstream 5.0kb upstream 7439   true scaffold_5: 19553542-19560980 Arabidopsis lyrata
AL5G41970 5.0kb upstream 5.0kb upstream 5000   false scaffold_5: 19555981-19560980 Arabidopsis lyrata
AL5G41970 5.0kb downstream 5.0kb downstream 7439   true scaffold_5: 19548542-19555980 Arabidopsis lyrata
AL5G41970 5.0kb downstream 5.0kb downstream 5000   false scaffold_5: 19548542-19553541 Arabidopsis lyrata
AL5G41970 10.0kb upstream 10.0kb upstream 12439   true scaffold_5: 19553542-19565980 Arabidopsis lyrata
AL5G41970 10.0kb upstream 10.0kb upstream 10000   false scaffold_5: 19555981-19565980 Arabidopsis lyrata
AL5G41970 10.0kb downstream 10.0kb downstream 12439   true scaffold_5: 19543542-19555980 Arabidopsis lyrata
AL5G41970 10.0kb downstream 10.0kb downstream 10000   false scaffold_5: 19543542-19553541 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365948 5261 Brassicaceae View MSA
123837359 5264 Brassicales-Malvales View MSA
124322295 5266 SBM View MSA
124252972 5268 Malvidae View MSA
124060937 5270 Rosid View MSA
123747300 5271 Pentapetalae View MSA
122794998 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain