Gene : AL5G45940 A. lyrata v2.1

Defline:  (1 of 2) PTHR11088:SF30 - ADENYLATE ISOPENTENYLTRANSFERASE 3, CHLOROPLASTIC Genomic Order:  3239
Name:  ? AL5G45940 Secondary Identifier:  ? PAC:35920477

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-2681 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL5G45940 0.5kb upstream 0.5kb upstream 1873   true scaffold_5: 21048180-21050052 Arabidopsis lyrata
AL5G45940 0.5kb upstream 0.5kb upstream 500   false scaffold_5: 21049553-21050052 Arabidopsis lyrata
AL5G45940 0.5kb downstream 0.5kb downstream 1873   true scaffold_5: 21047680-21049552 Arabidopsis lyrata
AL5G45940 0.5kb downstream 0.5kb downstream 500   false scaffold_5: 21047680-21048179 Arabidopsis lyrata
AL5G45940 1.0kb upstream 1.0kb upstream 2373   true scaffold_5: 21048180-21050552 Arabidopsis lyrata
AL5G45940 1.0kb upstream 1.0kb upstream 1000   false scaffold_5: 21049553-21050552 Arabidopsis lyrata
AL5G45940 1.0kb downstream 1.0kb downstream 2373   true scaffold_5: 21047180-21049552 Arabidopsis lyrata
AL5G45940 1.0kb downstream 1.0kb downstream 1000   false scaffold_5: 21047180-21048179 Arabidopsis lyrata
AL5G45940 2.0kb upstream 2.0kb upstream 3373   true scaffold_5: 21048180-21051552 Arabidopsis lyrata
AL5G45940 2.0kb upstream 2.0kb upstream 2000   false scaffold_5: 21049553-21051552 Arabidopsis lyrata
AL5G45940 2.0kb downstream 2.0kb downstream 3373   true scaffold_5: 21046180-21049552 Arabidopsis lyrata
AL5G45940 2.0kb downstream 2.0kb downstream 2000   false scaffold_5: 21046180-21048179 Arabidopsis lyrata
AL5G45940 5.0kb upstream 5.0kb upstream 6373   true scaffold_5: 21048180-21054552 Arabidopsis lyrata
AL5G45940 5.0kb upstream 5.0kb upstream 5000   false scaffold_5: 21049553-21054552 Arabidopsis lyrata
AL5G45940 5.0kb downstream 5.0kb downstream 6373   true scaffold_5: 21043180-21049552 Arabidopsis lyrata
AL5G45940 5.0kb downstream 5.0kb downstream 5000   false scaffold_5: 21043180-21048179 Arabidopsis lyrata
AL5G45940 10.0kb upstream 10.0kb upstream 11373   true scaffold_5: 21048180-21059552 Arabidopsis lyrata
AL5G45940 10.0kb upstream 10.0kb upstream 10000   false scaffold_5: 21049553-21059552 Arabidopsis lyrata
AL5G45940 10.0kb downstream 10.0kb downstream 11373   true scaffold_5: 21038180-21049552 Arabidopsis lyrata
AL5G45940 10.0kb downstream 10.0kb downstream 10000   false scaffold_5: 21038180-21048179 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374525 5261 Brassicaceae View MSA
123836221 5264 Brassicales-Malvales View MSA
124350163 5266 SBM View MSA
124241505 5268 Malvidae View MSA
124062328 5270 Rosid View MSA
123742235 5271 Pentapetalae View MSA
122793817 5272 Eudicot View MSA
122042275 5273 Angiosperm View MSA
121309945 5274 Embryophyte View MSA
123428607 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain