Gene : AL6G11470 A. lyrata v2.1

Defline:  (1 of 2) PTHR12725:SF72 - HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN Genomic Order:  136
Name:  ? AL6G11470 Secondary Identifier:  ? PAC:35927878

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7204 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL6G11470 0.5kb upstream 0.5kb upstream 3054   true scaffold_6: 540565-543618 Arabidopsis lyrata
AL6G11470 0.5kb upstream 0.5kb upstream 500   false scaffold_6: 540565-541064 Arabidopsis lyrata
AL6G11470 0.5kb downstream 0.5kb downstream 3054   true scaffold_6: 541065-544118 Arabidopsis lyrata
AL6G11470 0.5kb downstream 0.5kb downstream 500   false scaffold_6: 543619-544118 Arabidopsis lyrata
AL6G11470 1.0kb upstream 1.0kb upstream 3554   true scaffold_6: 540065-543618 Arabidopsis lyrata
AL6G11470 1.0kb upstream 1.0kb upstream 1000   false scaffold_6: 540065-541064 Arabidopsis lyrata
AL6G11470 1.0kb downstream 1.0kb downstream 3554   true scaffold_6: 541065-544618 Arabidopsis lyrata
AL6G11470 1.0kb downstream 1.0kb downstream 1000   false scaffold_6: 543619-544618 Arabidopsis lyrata
AL6G11470 2.0kb upstream 2.0kb upstream 4554   true scaffold_6: 539065-543618 Arabidopsis lyrata
AL6G11470 2.0kb upstream 2.0kb upstream 2000   false scaffold_6: 539065-541064 Arabidopsis lyrata
AL6G11470 2.0kb downstream 2.0kb downstream 4554   true scaffold_6: 541065-545618 Arabidopsis lyrata
AL6G11470 2.0kb downstream 2.0kb downstream 2000   false scaffold_6: 543619-545618 Arabidopsis lyrata
AL6G11470 5.0kb upstream 5.0kb upstream 7554   true scaffold_6: 536065-543618 Arabidopsis lyrata
AL6G11470 5.0kb upstream 5.0kb upstream 5000   false scaffold_6: 536065-541064 Arabidopsis lyrata
AL6G11470 5.0kb downstream 5.0kb downstream 7554   true scaffold_6: 541065-548618 Arabidopsis lyrata
AL6G11470 5.0kb downstream 5.0kb downstream 5000   false scaffold_6: 543619-548618 Arabidopsis lyrata
AL6G11470 10.0kb upstream 10.0kb upstream 12554   true scaffold_6: 531065-543618 Arabidopsis lyrata
AL6G11470 10.0kb upstream 10.0kb upstream 10000   false scaffold_6: 531065-541064 Arabidopsis lyrata
AL6G11470 10.0kb downstream 10.0kb downstream 12554   true scaffold_6: 541065-553618 Arabidopsis lyrata
AL6G11470 10.0kb downstream 10.0kb downstream 10000   false scaffold_6: 543619-553618 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364215 5261 Brassicaceae View MSA
123838944 5264 Brassicales-Malvales View MSA
124350417 5266 SBM View MSA
124254189 5268 Malvidae View MSA
124070818 5270 Rosid View MSA
123749879 5271 Pentapetalae View MSA
122794790 5272 Eudicot View MSA
122045450 5273 Angiosperm View MSA
121348248 5274 Embryophyte View MSA
123426890 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain