Gene : AL6G10620 A. lyrata v2.1

Defline:  (1 of 3) PTHR12183:SF16 - PROTEIN ABERRANT POLLEN DEVELOPMENT 1-RELATED Genomic Order:  59
Name:  ? AL6G10620 Secondary Identifier:  ? PAC:35926543

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7511 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL6G10620 0.5kb upstream 0.5kb upstream 3685   true scaffold_6: 239231-242915 Arabidopsis lyrata
AL6G10620 0.5kb upstream 0.5kb upstream 500   false scaffold_6: 239231-239730 Arabidopsis lyrata
AL6G10620 0.5kb downstream 0.5kb downstream 3685   true scaffold_6: 239731-243415 Arabidopsis lyrata
AL6G10620 0.5kb downstream 0.5kb downstream 500   false scaffold_6: 242916-243415 Arabidopsis lyrata
AL6G10620 1.0kb upstream 1.0kb upstream 4185   true scaffold_6: 238731-242915 Arabidopsis lyrata
AL6G10620 1.0kb upstream 1.0kb upstream 1000   false scaffold_6: 238731-239730 Arabidopsis lyrata
AL6G10620 1.0kb downstream 1.0kb downstream 4185   true scaffold_6: 239731-243915 Arabidopsis lyrata
AL6G10620 1.0kb downstream 1.0kb downstream 1000   false scaffold_6: 242916-243915 Arabidopsis lyrata
AL6G10620 2.0kb upstream 2.0kb upstream 5185   true scaffold_6: 237731-242915 Arabidopsis lyrata
AL6G10620 2.0kb upstream 2.0kb upstream 2000   false scaffold_6: 237731-239730 Arabidopsis lyrata
AL6G10620 2.0kb downstream 2.0kb downstream 5185   true scaffold_6: 239731-244915 Arabidopsis lyrata
AL6G10620 2.0kb downstream 2.0kb downstream 2000   false scaffold_6: 242916-244915 Arabidopsis lyrata
AL6G10620 5.0kb upstream 5.0kb upstream 8185   true scaffold_6: 234731-242915 Arabidopsis lyrata
AL6G10620 5.0kb upstream 5.0kb upstream 5000   false scaffold_6: 234731-239730 Arabidopsis lyrata
AL6G10620 5.0kb downstream 5.0kb downstream 8185   true scaffold_6: 239731-247915 Arabidopsis lyrata
AL6G10620 5.0kb downstream 5.0kb downstream 5000   false scaffold_6: 242916-247915 Arabidopsis lyrata
AL6G10620 10.0kb upstream 10.0kb upstream 13185   true scaffold_6: 229731-242915 Arabidopsis lyrata
AL6G10620 10.0kb upstream 10.0kb upstream 10000   false scaffold_6: 229731-239730 Arabidopsis lyrata
AL6G10620 10.0kb downstream 10.0kb downstream 13185   true scaffold_6: 239731-252915 Arabidopsis lyrata
AL6G10620 10.0kb downstream 10.0kb downstream 10000   false scaffold_6: 242916-252915 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122792833 5272 Eudicot View MSA
122372964 5261 Brassicaceae View MSA
123838874 5264 Brassicales-Malvales View MSA
124344193 5266 SBM View MSA
124250832 5268 Malvidae View MSA
124070780 5270 Rosid View MSA
123741557 5271 Pentapetalae View MSA
122042274 5273 Angiosperm View MSA
121349312 5274 Embryophyte View MSA
123381271 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain