Gene : AL6G13370 A. lyrata v2.1

Defline:  (1 of 1) PTHR11062//PTHR11062:SF66 - EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED // SUBFAMILY NOT NAMED Genomic Order:  310
Name:  ? AL6G13370 Secondary Identifier:  ? PAC:35929332

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-5980 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL6G13370 0.5kb upstream 0.5kb upstream 3696   true scaffold_6: 1199126-1202821 Arabidopsis lyrata
AL6G13370 0.5kb upstream 0.5kb upstream 500   false scaffold_6: 1202322-1202821 Arabidopsis lyrata
AL6G13370 0.5kb downstream 0.5kb downstream 3696   true scaffold_6: 1198626-1202321 Arabidopsis lyrata
AL6G13370 0.5kb downstream 0.5kb downstream 500   false scaffold_6: 1198626-1199125 Arabidopsis lyrata
AL6G13370 1.0kb upstream 1.0kb upstream 4196   true scaffold_6: 1199126-1203321 Arabidopsis lyrata
AL6G13370 1.0kb upstream 1.0kb upstream 1000   false scaffold_6: 1202322-1203321 Arabidopsis lyrata
AL6G13370 1.0kb downstream 1.0kb downstream 4196   true scaffold_6: 1198126-1202321 Arabidopsis lyrata
AL6G13370 1.0kb downstream 1.0kb downstream 1000   false scaffold_6: 1198126-1199125 Arabidopsis lyrata
AL6G13370 2.0kb upstream 2.0kb upstream 5196   true scaffold_6: 1199126-1204321 Arabidopsis lyrata
AL6G13370 2.0kb upstream 2.0kb upstream 2000   false scaffold_6: 1202322-1204321 Arabidopsis lyrata
AL6G13370 2.0kb downstream 2.0kb downstream 5196   true scaffold_6: 1197126-1202321 Arabidopsis lyrata
AL6G13370 2.0kb downstream 2.0kb downstream 2000   false scaffold_6: 1197126-1199125 Arabidopsis lyrata
AL6G13370 5.0kb upstream 5.0kb upstream 8196   true scaffold_6: 1199126-1207321 Arabidopsis lyrata
AL6G13370 5.0kb upstream 5.0kb upstream 5000   false scaffold_6: 1202322-1207321 Arabidopsis lyrata
AL6G13370 5.0kb downstream 5.0kb downstream 8196   true scaffold_6: 1194126-1202321 Arabidopsis lyrata
AL6G13370 5.0kb downstream 5.0kb downstream 5000   false scaffold_6: 1194126-1199125 Arabidopsis lyrata
AL6G13370 10.0kb upstream 10.0kb upstream 13196   true scaffold_6: 1199126-1212321 Arabidopsis lyrata
AL6G13370 10.0kb upstream 10.0kb upstream 10000   false scaffold_6: 1202322-1212321 Arabidopsis lyrata
AL6G13370 10.0kb downstream 10.0kb downstream 13196   true scaffold_6: 1189126-1202321 Arabidopsis lyrata
AL6G13370 10.0kb downstream 10.0kb downstream 10000   false scaffold_6: 1189126-1199125 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361320 5261 Brassicaceae View MSA
123836554 5264 Brassicales-Malvales View MSA
124350452 5266 SBM View MSA
124244067 5268 Malvidae View MSA
124070625 5270 Rosid View MSA
123746709 5271 Pentapetalae View MSA
122795318 5272 Eudicot View MSA
122050562 5273 Angiosperm View MSA
121350610 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain