Gene : AL6G22020 A. lyrata v2.1

Defline:  (1 of 1) PTHR11624:SF64 - 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN Genomic Order:  1133
Name:  ? AL6G22020 Secondary Identifier:  ? PAC:35927029

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7560 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL6G22020 0.5kb upstream 0.5kb upstream 3947   true scaffold_6: 4545381-4549327 Arabidopsis lyrata
AL6G22020 0.5kb upstream 0.5kb upstream 500   false scaffold_6: 4545381-4545880 Arabidopsis lyrata
AL6G22020 0.5kb downstream 0.5kb downstream 3947   true scaffold_6: 4545881-4549827 Arabidopsis lyrata
AL6G22020 0.5kb downstream 0.5kb downstream 500   false scaffold_6: 4549328-4549827 Arabidopsis lyrata
AL6G22020 1.0kb upstream 1.0kb upstream 4447   true scaffold_6: 4544881-4549327 Arabidopsis lyrata
AL6G22020 1.0kb upstream 1.0kb upstream 1000   false scaffold_6: 4544881-4545880 Arabidopsis lyrata
AL6G22020 1.0kb downstream 1.0kb downstream 4447   true scaffold_6: 4545881-4550327 Arabidopsis lyrata
AL6G22020 1.0kb downstream 1.0kb downstream 1000   false scaffold_6: 4549328-4550327 Arabidopsis lyrata
AL6G22020 2.0kb upstream 2.0kb upstream 5447   true scaffold_6: 4543881-4549327 Arabidopsis lyrata
AL6G22020 2.0kb upstream 2.0kb upstream 2000   false scaffold_6: 4543881-4545880 Arabidopsis lyrata
AL6G22020 2.0kb downstream 2.0kb downstream 5447   true scaffold_6: 4545881-4551327 Arabidopsis lyrata
AL6G22020 2.0kb downstream 2.0kb downstream 2000   false scaffold_6: 4549328-4551327 Arabidopsis lyrata
AL6G22020 5.0kb upstream 5.0kb upstream 8447   true scaffold_6: 4540881-4549327 Arabidopsis lyrata
AL6G22020 5.0kb upstream 5.0kb upstream 5000   false scaffold_6: 4540881-4545880 Arabidopsis lyrata
AL6G22020 5.0kb downstream 5.0kb downstream 8447   true scaffold_6: 4545881-4554327 Arabidopsis lyrata
AL6G22020 5.0kb downstream 5.0kb downstream 5000   false scaffold_6: 4549328-4554327 Arabidopsis lyrata
AL6G22020 10.0kb upstream 10.0kb upstream 13447   true scaffold_6: 4535881-4549327 Arabidopsis lyrata
AL6G22020 10.0kb upstream 10.0kb upstream 10000   false scaffold_6: 4535881-4545880 Arabidopsis lyrata
AL6G22020 10.0kb downstream 10.0kb downstream 13447   true scaffold_6: 4545881-4559327 Arabidopsis lyrata
AL6G22020 10.0kb downstream 10.0kb downstream 10000   false scaffold_6: 4549328-4559327 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373986 5261 Brassicaceae View MSA
123829072 5264 Brassicales-Malvales View MSA
124342617 5266 SBM View MSA
124239225 5268 Malvidae View MSA
124066019 5270 Rosid View MSA
123737503 5271 Pentapetalae View MSA
122791788 5272 Eudicot View MSA
122044949 5273 Angiosperm View MSA
121310367 5274 Embryophyte View MSA
123347869 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain