Gene : AL6G19400 A. lyrata v2.1

Defline:  (1 of 3) K02133 - F-type H+-transporting ATPase subunit beta (ATPeF1B, ATP5B, ATP2) Genomic Order:  887
Name:  ? AL6G19400 Secondary Identifier:  ? PAC:35929789

Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-6126 Arabidopsis lyrata pathologic  
Alyrata PWY-7219 Arabidopsis lyrata pathologic  
Alyrata PWY-7229 Arabidopsis lyrata pathologic  
Alyrata PWY-841 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL6G19400 0.5kb upstream 0.5kb upstream 3785   true scaffold_6: 3610791-3614575 Arabidopsis lyrata
AL6G19400 0.5kb upstream 0.5kb upstream 500   false scaffold_6: 3614076-3614575 Arabidopsis lyrata
AL6G19400 0.5kb downstream 0.5kb downstream 3785   true scaffold_6: 3610291-3614075 Arabidopsis lyrata
AL6G19400 0.5kb downstream 0.5kb downstream 500   false scaffold_6: 3610291-3610790 Arabidopsis lyrata
AL6G19400 1.0kb upstream 1.0kb upstream 4285   true scaffold_6: 3610791-3615075 Arabidopsis lyrata
AL6G19400 1.0kb upstream 1.0kb upstream 1000   false scaffold_6: 3614076-3615075 Arabidopsis lyrata
AL6G19400 1.0kb downstream 1.0kb downstream 4285   true scaffold_6: 3609791-3614075 Arabidopsis lyrata
AL6G19400 1.0kb downstream 1.0kb downstream 1000   false scaffold_6: 3609791-3610790 Arabidopsis lyrata
AL6G19400 2.0kb upstream 2.0kb upstream 5285   true scaffold_6: 3610791-3616075 Arabidopsis lyrata
AL6G19400 2.0kb upstream 2.0kb upstream 2000   false scaffold_6: 3614076-3616075 Arabidopsis lyrata
AL6G19400 2.0kb downstream 2.0kb downstream 5285   true scaffold_6: 3608791-3614075 Arabidopsis lyrata
AL6G19400 2.0kb downstream 2.0kb downstream 2000   false scaffold_6: 3608791-3610790 Arabidopsis lyrata
AL6G19400 5.0kb upstream 5.0kb upstream 8285   true scaffold_6: 3610791-3619075 Arabidopsis lyrata
AL6G19400 5.0kb upstream 5.0kb upstream 5000   false scaffold_6: 3614076-3619075 Arabidopsis lyrata
AL6G19400 5.0kb downstream 5.0kb downstream 8285   true scaffold_6: 3605791-3614075 Arabidopsis lyrata
AL6G19400 5.0kb downstream 5.0kb downstream 5000   false scaffold_6: 3605791-3610790 Arabidopsis lyrata
AL6G19400 10.0kb upstream 10.0kb upstream 13285   true scaffold_6: 3610791-3624075 Arabidopsis lyrata
AL6G19400 10.0kb upstream 10.0kb upstream 10000   false scaffold_6: 3614076-3624075 Arabidopsis lyrata
AL6G19400 10.0kb downstream 10.0kb downstream 13285   true scaffold_6: 3600791-3614075 Arabidopsis lyrata
AL6G19400 10.0kb downstream 10.0kb downstream 10000   false scaffold_6: 3600791-3610790 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365207 5261 Brassicaceae View MSA
123831006 5264 Brassicales-Malvales View MSA
124350602 5266 SBM View MSA
124250549 5268 Malvidae View MSA
124072402 5270 Rosid View MSA
123749962 5271 Pentapetalae View MSA
122797810 5272 Eudicot View MSA
122051511 5273 Angiosperm View MSA
121351676 5274 Embryophyte View MSA
123424920 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain