Gene : AL6G20090 A. lyrata v2.1

Defline:  (1 of 1) PTHR11540:SF21 - MALATE DEHYDROGENASE, GLYOXYSOMAL Genomic Order:  951
Name:  ? AL6G20090 Secondary Identifier:  ? PAC:35928696

Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata GLUCONEO-PWY Arabidopsis lyrata pathologic  
Alyrata GLYOXYLATE-BYPASS Arabidopsis lyrata pathologic  
Alyrata PWY-5464 Arabidopsis lyrata pathologic  
Alyrata PWY-561 Arabidopsis lyrata pathologic  
Alyrata PWY-5690 Arabidopsis lyrata pathologic  
Alyrata PWY66-399 Arabidopsis lyrata pathologic  
Alyrata PWY-7115 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL6G20090 0.5kb upstream 0.5kb upstream 2676   true scaffold_6: 3818877-3821552 Arabidopsis lyrata
AL6G20090 0.5kb upstream 0.5kb upstream 500   false scaffold_6: 3821053-3821552 Arabidopsis lyrata
AL6G20090 0.5kb downstream 0.5kb downstream 2676   true scaffold_6: 3818377-3821052 Arabidopsis lyrata
AL6G20090 0.5kb downstream 0.5kb downstream 500   false scaffold_6: 3818377-3818876 Arabidopsis lyrata
AL6G20090 1.0kb upstream 1.0kb upstream 3176   true scaffold_6: 3818877-3822052 Arabidopsis lyrata
AL6G20090 1.0kb upstream 1.0kb upstream 1000   false scaffold_6: 3821053-3822052 Arabidopsis lyrata
AL6G20090 1.0kb downstream 1.0kb downstream 3176   true scaffold_6: 3817877-3821052 Arabidopsis lyrata
AL6G20090 1.0kb downstream 1.0kb downstream 1000   false scaffold_6: 3817877-3818876 Arabidopsis lyrata
AL6G20090 2.0kb upstream 2.0kb upstream 4176   true scaffold_6: 3818877-3823052 Arabidopsis lyrata
AL6G20090 2.0kb upstream 2.0kb upstream 2000   false scaffold_6: 3821053-3823052 Arabidopsis lyrata
AL6G20090 2.0kb downstream 2.0kb downstream 4176   true scaffold_6: 3816877-3821052 Arabidopsis lyrata
AL6G20090 2.0kb downstream 2.0kb downstream 2000   false scaffold_6: 3816877-3818876 Arabidopsis lyrata
AL6G20090 5.0kb upstream 5.0kb upstream 7176   true scaffold_6: 3818877-3826052 Arabidopsis lyrata
AL6G20090 5.0kb upstream 5.0kb upstream 5000   false scaffold_6: 3821053-3826052 Arabidopsis lyrata
AL6G20090 5.0kb downstream 5.0kb downstream 7176   true scaffold_6: 3813877-3821052 Arabidopsis lyrata
AL6G20090 5.0kb downstream 5.0kb downstream 5000   false scaffold_6: 3813877-3818876 Arabidopsis lyrata
AL6G20090 10.0kb upstream 10.0kb upstream 12176   true scaffold_6: 3818877-3831052 Arabidopsis lyrata
AL6G20090 10.0kb upstream 10.0kb upstream 10000   false scaffold_6: 3821053-3831052 Arabidopsis lyrata
AL6G20090 10.0kb downstream 10.0kb downstream 12176   true scaffold_6: 3808877-3821052 Arabidopsis lyrata
AL6G20090 10.0kb downstream 10.0kb downstream 10000   false scaffold_6: 3808877-3818876 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368946 5261 Brassicaceae View MSA
123839952 5264 Brassicales-Malvales View MSA
124348581 5266 SBM View MSA
124236845 5268 Malvidae View MSA
124072228 5270 Rosid View MSA
123748567 5271 Pentapetalae View MSA
122789839 5272 Eudicot View MSA
122041534 5273 Angiosperm View MSA
121344614 5274 Embryophyte View MSA
123426123 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain