Gene : AL6G20280 A. lyrata v2.1

Defline:  (1 of 4) 2.4.1.29 - Cellulose synthase (GDP-forming) / GDP-glucose-cellulose glucosyltransferase Genomic Order:  970
Name:  ? AL6G20280 Secondary Identifier:  ? PAC:35929377

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1001 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL6G20280 0.5kb upstream 0.5kb upstream 5932   true scaffold_6: 3894419-3900350 Arabidopsis lyrata
AL6G20280 0.5kb upstream 0.5kb upstream 500   false scaffold_6: 3894419-3894918 Arabidopsis lyrata
AL6G20280 0.5kb downstream 0.5kb downstream 5932   true scaffold_6: 3894919-3900850 Arabidopsis lyrata
AL6G20280 0.5kb downstream 0.5kb downstream 500   false scaffold_6: 3900351-3900850 Arabidopsis lyrata
AL6G20280 1.0kb upstream 1.0kb upstream 6432   true scaffold_6: 3893919-3900350 Arabidopsis lyrata
AL6G20280 1.0kb upstream 1.0kb upstream 1000   false scaffold_6: 3893919-3894918 Arabidopsis lyrata
AL6G20280 1.0kb downstream 1.0kb downstream 6432   true scaffold_6: 3894919-3901350 Arabidopsis lyrata
AL6G20280 1.0kb downstream 1.0kb downstream 1000   false scaffold_6: 3900351-3901350 Arabidopsis lyrata
AL6G20280 2.0kb upstream 2.0kb upstream 7432   true scaffold_6: 3892919-3900350 Arabidopsis lyrata
AL6G20280 2.0kb upstream 2.0kb upstream 2000   false scaffold_6: 3892919-3894918 Arabidopsis lyrata
AL6G20280 2.0kb downstream 2.0kb downstream 7432   true scaffold_6: 3894919-3902350 Arabidopsis lyrata
AL6G20280 2.0kb downstream 2.0kb downstream 2000   false scaffold_6: 3900351-3902350 Arabidopsis lyrata
AL6G20280 5.0kb upstream 5.0kb upstream 10432   true scaffold_6: 3889919-3900350 Arabidopsis lyrata
AL6G20280 5.0kb upstream 5.0kb upstream 5000   false scaffold_6: 3889919-3894918 Arabidopsis lyrata
AL6G20280 5.0kb downstream 5.0kb downstream 10432   true scaffold_6: 3894919-3905350 Arabidopsis lyrata
AL6G20280 5.0kb downstream 5.0kb downstream 5000   false scaffold_6: 3900351-3905350 Arabidopsis lyrata
AL6G20280 10.0kb upstream 10.0kb upstream 15432   true scaffold_6: 3884919-3900350 Arabidopsis lyrata
AL6G20280 10.0kb upstream 10.0kb upstream 10000   false scaffold_6: 3884919-3894918 Arabidopsis lyrata
AL6G20280 10.0kb downstream 10.0kb downstream 15432   true scaffold_6: 3894919-3910350 Arabidopsis lyrata
AL6G20280 10.0kb downstream 10.0kb downstream 10000   false scaffold_6: 3900351-3910350 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373968 5261 Brassicaceae View MSA
123800654 5264 Brassicales-Malvales View MSA
124298044 5266 SBM View MSA
124149784 5268 Malvidae View MSA
123875523 5270 Rosid View MSA
123746162 5271 Pentapetalae View MSA
122771799 5272 Eudicot View MSA
122048668 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain