Gene : AL6G31560 A. lyrata v2.1

Defline:  (1 of 2) PTHR24071:SF7 - GTP-BINDING NUCLEAR PROTEIN RAN-2 Genomic Order:  2043
Name:  ? AL6G31560 Secondary Identifier:  ? PAC:35927508

Sequence Feature Displayer

Ontology Annotation Displayer

9 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata ILEUDEG-PWY Arabidopsis lyrata pathologic  
Alyrata PWY-5136 Arabidopsis lyrata pathologic  
Alyrata PWY-5138 Arabidopsis lyrata pathologic  
Alyrata PWY-561 Arabidopsis lyrata pathologic  
Alyrata PWY-6435 Arabidopsis lyrata pathologic  
Alyrata PWY-7036 Arabidopsis lyrata pathologic  
Alyrata PWY-735 Arabidopsis lyrata pathologic  
Alyrata PWY-7606 Arabidopsis lyrata pathologic  
Alyrata VALDEG-PWY Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL6G31560 0.5kb upstream 0.5kb upstream 2394   true scaffold_6: 8470339-8472732 Arabidopsis lyrata
AL6G31560 0.5kb upstream 0.5kb upstream 500   false scaffold_6: 8470339-8470838 Arabidopsis lyrata
AL6G31560 0.5kb downstream 0.5kb downstream 2394   true scaffold_6: 8470839-8473232 Arabidopsis lyrata
AL6G31560 0.5kb downstream 0.5kb downstream 500   false scaffold_6: 8472733-8473232 Arabidopsis lyrata
AL6G31560 1.0kb upstream 1.0kb upstream 2894   true scaffold_6: 8469839-8472732 Arabidopsis lyrata
AL6G31560 1.0kb upstream 1.0kb upstream 1000   false scaffold_6: 8469839-8470838 Arabidopsis lyrata
AL6G31560 1.0kb downstream 1.0kb downstream 2894   true scaffold_6: 8470839-8473732 Arabidopsis lyrata
AL6G31560 1.0kb downstream 1.0kb downstream 1000   false scaffold_6: 8472733-8473732 Arabidopsis lyrata
AL6G31560 2.0kb upstream 2.0kb upstream 3894   true scaffold_6: 8468839-8472732 Arabidopsis lyrata
AL6G31560 2.0kb upstream 2.0kb upstream 2000   false scaffold_6: 8468839-8470838 Arabidopsis lyrata
AL6G31560 2.0kb downstream 2.0kb downstream 3894   true scaffold_6: 8470839-8474732 Arabidopsis lyrata
AL6G31560 2.0kb downstream 2.0kb downstream 2000   false scaffold_6: 8472733-8474732 Arabidopsis lyrata
AL6G31560 5.0kb upstream 5.0kb upstream 6894   true scaffold_6: 8465839-8472732 Arabidopsis lyrata
AL6G31560 5.0kb upstream 5.0kb upstream 5000   false scaffold_6: 8465839-8470838 Arabidopsis lyrata
AL6G31560 5.0kb downstream 5.0kb downstream 6894   true scaffold_6: 8470839-8477732 Arabidopsis lyrata
AL6G31560 5.0kb downstream 5.0kb downstream 5000   false scaffold_6: 8472733-8477732 Arabidopsis lyrata
AL6G31560 10.0kb upstream 10.0kb upstream 11894   true scaffold_6: 8460839-8472732 Arabidopsis lyrata
AL6G31560 10.0kb upstream 10.0kb upstream 10000   false scaffold_6: 8460839-8470838 Arabidopsis lyrata
AL6G31560 10.0kb downstream 10.0kb downstream 11894   true scaffold_6: 8470839-8482732 Arabidopsis lyrata
AL6G31560 10.0kb downstream 10.0kb downstream 10000   false scaffold_6: 8472733-8482732 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371036 5261 Brassicaceae View MSA
123829338 5264 Brassicales-Malvales View MSA
124347070 5266 SBM View MSA
124237166 5268 Malvidae View MSA
124073929 5270 Rosid View MSA
123749309 5271 Pentapetalae View MSA
122790069 5272 Eudicot View MSA
122051651 5273 Angiosperm View MSA
121349425 5274 Embryophyte View MSA
123424763 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain