Gene : AL6G28400 A. lyrata v2.1

Defline:  (1 of 1) PTHR11999//PTHR11999:SF92 - GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE // SUBFAMILY NOT NAMED Genomic Order:  1739
Name:  ? AL6G28400 Secondary Identifier:  ? PAC:35925766

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata GLUDEG-I-PWY Arabidopsis lyrata pathologic  
Alyrata PWY0-1305 Arabidopsis lyrata pathologic  
Alyrata PWY-4321 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL6G28400 0.5kb upstream 0.5kb upstream 4632   true scaffold_6: 7165012-7169643 Arabidopsis lyrata
AL6G28400 0.5kb upstream 0.5kb upstream 500   false scaffold_6: 7165012-7165511 Arabidopsis lyrata
AL6G28400 0.5kb downstream 0.5kb downstream 4632   true scaffold_6: 7165512-7170143 Arabidopsis lyrata
AL6G28400 0.5kb downstream 0.5kb downstream 500   false scaffold_6: 7169644-7170143 Arabidopsis lyrata
AL6G28400 1.0kb upstream 1.0kb upstream 5132   true scaffold_6: 7164512-7169643 Arabidopsis lyrata
AL6G28400 1.0kb upstream 1.0kb upstream 1000   false scaffold_6: 7164512-7165511 Arabidopsis lyrata
AL6G28400 1.0kb downstream 1.0kb downstream 5132   true scaffold_6: 7165512-7170643 Arabidopsis lyrata
AL6G28400 1.0kb downstream 1.0kb downstream 1000   false scaffold_6: 7169644-7170643 Arabidopsis lyrata
AL6G28400 2.0kb upstream 2.0kb upstream 6132   true scaffold_6: 7163512-7169643 Arabidopsis lyrata
AL6G28400 2.0kb upstream 2.0kb upstream 2000   false scaffold_6: 7163512-7165511 Arabidopsis lyrata
AL6G28400 2.0kb downstream 2.0kb downstream 6132   true scaffold_6: 7165512-7171643 Arabidopsis lyrata
AL6G28400 2.0kb downstream 2.0kb downstream 2000   false scaffold_6: 7169644-7171643 Arabidopsis lyrata
AL6G28400 5.0kb upstream 5.0kb upstream 9132   true scaffold_6: 7160512-7169643 Arabidopsis lyrata
AL6G28400 5.0kb upstream 5.0kb upstream 5000   false scaffold_6: 7160512-7165511 Arabidopsis lyrata
AL6G28400 5.0kb downstream 5.0kb downstream 9132   true scaffold_6: 7165512-7174643 Arabidopsis lyrata
AL6G28400 5.0kb downstream 5.0kb downstream 5000   false scaffold_6: 7169644-7174643 Arabidopsis lyrata
AL6G28400 10.0kb upstream 10.0kb upstream 14132   true scaffold_6: 7155512-7169643 Arabidopsis lyrata
AL6G28400 10.0kb upstream 10.0kb upstream 10000   false scaffold_6: 7155512-7165511 Arabidopsis lyrata
AL6G28400 10.0kb downstream 10.0kb downstream 14132   true scaffold_6: 7165512-7179643 Arabidopsis lyrata
AL6G28400 10.0kb downstream 10.0kb downstream 10000   false scaffold_6: 7169644-7179643 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380597 5261 Brassicaceae View MSA
123833803 5264 Brassicales-Malvales View MSA
124345167 5266 SBM View MSA
124252888 5268 Malvidae View MSA
124073926 5270 Rosid View MSA
123749296 5271 Pentapetalae View MSA
122788993 5272 Eudicot View MSA
122047192 5273 Angiosperm View MSA
121350824 5274 Embryophyte View MSA
123427084 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain