Gene : AL6G28280 A. lyrata v2.1

Defline:  (1 of 1) 2.5.1.32 - 15-cis-phytoene synthase / PSase Genomic Order:  1728
Name:  ? AL6G28280 Secondary Identifier:  ? PAC:35927076

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata CAROTENOID-PWY Arabidopsis lyrata pathologic  
Alyrata PWY-6475 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL6G28280 0.5kb upstream 0.5kb upstream 3765   true scaffold_6: 7059473-7063237 Arabidopsis lyrata
AL6G28280 0.5kb upstream 0.5kb upstream 500   false scaffold_6: 7062738-7063237 Arabidopsis lyrata
AL6G28280 0.5kb downstream 0.5kb downstream 3765   true scaffold_6: 7058973-7062737 Arabidopsis lyrata
AL6G28280 0.5kb downstream 0.5kb downstream 500   false scaffold_6: 7058973-7059472 Arabidopsis lyrata
AL6G28280 1.0kb upstream 1.0kb upstream 4265   true scaffold_6: 7059473-7063737 Arabidopsis lyrata
AL6G28280 1.0kb upstream 1.0kb upstream 1000   false scaffold_6: 7062738-7063737 Arabidopsis lyrata
AL6G28280 1.0kb downstream 1.0kb downstream 4265   true scaffold_6: 7058473-7062737 Arabidopsis lyrata
AL6G28280 1.0kb downstream 1.0kb downstream 1000   false scaffold_6: 7058473-7059472 Arabidopsis lyrata
AL6G28280 2.0kb upstream 2.0kb upstream 5265   true scaffold_6: 7059473-7064737 Arabidopsis lyrata
AL6G28280 2.0kb upstream 2.0kb upstream 2000   false scaffold_6: 7062738-7064737 Arabidopsis lyrata
AL6G28280 2.0kb downstream 2.0kb downstream 5265   true scaffold_6: 7057473-7062737 Arabidopsis lyrata
AL6G28280 2.0kb downstream 2.0kb downstream 2000   false scaffold_6: 7057473-7059472 Arabidopsis lyrata
AL6G28280 5.0kb upstream 5.0kb upstream 8265   true scaffold_6: 7059473-7067737 Arabidopsis lyrata
AL6G28280 5.0kb upstream 5.0kb upstream 5000   false scaffold_6: 7062738-7067737 Arabidopsis lyrata
AL6G28280 5.0kb downstream 5.0kb downstream 8265   true scaffold_6: 7054473-7062737 Arabidopsis lyrata
AL6G28280 5.0kb downstream 5.0kb downstream 5000   false scaffold_6: 7054473-7059472 Arabidopsis lyrata
AL6G28280 10.0kb upstream 10.0kb upstream 13265   true scaffold_6: 7059473-7072737 Arabidopsis lyrata
AL6G28280 10.0kb upstream 10.0kb upstream 10000   false scaffold_6: 7062738-7072737 Arabidopsis lyrata
AL6G28280 10.0kb downstream 10.0kb downstream 13265   true scaffold_6: 7049473-7062737 Arabidopsis lyrata
AL6G28280 10.0kb downstream 10.0kb downstream 10000   false scaffold_6: 7049473-7059472 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
122366550 5261 Brassicaceae View MSA
123829809 5264 Brassicales-Malvales View MSA
124345575 5266 SBM View MSA
124251202 5268 Malvidae View MSA
124069921 5270 Rosid View MSA
123743557 5271 Pentapetalae View MSA
122795955 5272 Eudicot View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain