Gene : AL6G23590 A. lyrata v2.1

Defline:  (1 of 1) PTHR12741:SF21 - CALLOSE SYNTHASE 3 Genomic Order:  1282
Name:  ? AL6G23590 Secondary Identifier:  ? PAC:35926019

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-6773 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL6G23590 0.5kb upstream 0.5kb upstream 14515   true scaffold_6: 5194014-5208528 Arabidopsis lyrata
AL6G23590 0.5kb upstream 0.5kb upstream 500   false scaffold_6: 5208029-5208528 Arabidopsis lyrata
AL6G23590 0.5kb downstream 0.5kb downstream 14515   true scaffold_6: 5193514-5208028 Arabidopsis lyrata
AL6G23590 0.5kb downstream 0.5kb downstream 500   false scaffold_6: 5193514-5194013 Arabidopsis lyrata
AL6G23590 1.0kb upstream 1.0kb upstream 15015   true scaffold_6: 5194014-5209028 Arabidopsis lyrata
AL6G23590 1.0kb upstream 1.0kb upstream 1000   false scaffold_6: 5208029-5209028 Arabidopsis lyrata
AL6G23590 1.0kb downstream 1.0kb downstream 15015   true scaffold_6: 5193014-5208028 Arabidopsis lyrata
AL6G23590 1.0kb downstream 1.0kb downstream 1000   false scaffold_6: 5193014-5194013 Arabidopsis lyrata
AL6G23590 2.0kb upstream 2.0kb upstream 16015   true scaffold_6: 5194014-5210028 Arabidopsis lyrata
AL6G23590 2.0kb upstream 2.0kb upstream 2000   false scaffold_6: 5208029-5210028 Arabidopsis lyrata
AL6G23590 2.0kb downstream 2.0kb downstream 16015   true scaffold_6: 5192014-5208028 Arabidopsis lyrata
AL6G23590 2.0kb downstream 2.0kb downstream 2000   false scaffold_6: 5192014-5194013 Arabidopsis lyrata
AL6G23590 5.0kb upstream 5.0kb upstream 19015   true scaffold_6: 5194014-5213028 Arabidopsis lyrata
AL6G23590 5.0kb upstream 5.0kb upstream 5000   false scaffold_6: 5208029-5213028 Arabidopsis lyrata
AL6G23590 5.0kb downstream 5.0kb downstream 19015   true scaffold_6: 5189014-5208028 Arabidopsis lyrata
AL6G23590 5.0kb downstream 5.0kb downstream 5000   false scaffold_6: 5189014-5194013 Arabidopsis lyrata
AL6G23590 10.0kb upstream 10.0kb upstream 24015   true scaffold_6: 5194014-5218028 Arabidopsis lyrata
AL6G23590 10.0kb upstream 10.0kb upstream 10000   false scaffold_6: 5208029-5218028 Arabidopsis lyrata
AL6G23590 10.0kb downstream 10.0kb downstream 24015   true scaffold_6: 5184014-5208028 Arabidopsis lyrata
AL6G23590 10.0kb downstream 10.0kb downstream 10000   false scaffold_6: 5184014-5194013 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375589 5261 Brassicaceae View MSA
123839763 5264 Brassicales-Malvales View MSA
124346959 5266 SBM View MSA
124251802 5268 Malvidae View MSA
124072639 5270 Rosid View MSA
123745171 5271 Pentapetalae View MSA
122788947 5272 Eudicot View MSA
122050431 5273 Angiosperm View MSA
121349066 5274 Embryophyte View MSA
123428420 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain