Gene : AL6G40540 A. lyrata v2.1
Defline:  (1 of 5) PTHR31165:SF13 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATED Genomic Order:  2865
Name:  ? AL6G40540 Secondary Identifier:  ? PAC:35928898
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0 Pathways

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL6G40540 0.5kb upstream 0.5kb upstream 1652   true scaffold_6: 13780742-13782393 Arabidopsis lyrata
AL6G40540 0.5kb upstream 0.5kb upstream 500   false scaffold_6: 13781894-13782393 Arabidopsis lyrata
AL6G40540 0.5kb downstream 0.5kb downstream 1652   true scaffold_6: 13780242-13781893 Arabidopsis lyrata
AL6G40540 0.5kb downstream 0.5kb downstream 500   false scaffold_6: 13780242-13780741 Arabidopsis lyrata
AL6G40540 1.0kb upstream 1.0kb upstream 2152   true scaffold_6: 13780742-13782893 Arabidopsis lyrata
AL6G40540 1.0kb upstream 1.0kb upstream 1000   false scaffold_6: 13781894-13782893 Arabidopsis lyrata
AL6G40540 1.0kb downstream 1.0kb downstream 2152   true scaffold_6: 13779742-13781893 Arabidopsis lyrata
AL6G40540 1.0kb downstream 1.0kb downstream 1000   false scaffold_6: 13779742-13780741 Arabidopsis lyrata
AL6G40540 2.0kb upstream 2.0kb upstream 3152   true scaffold_6: 13780742-13783893 Arabidopsis lyrata
AL6G40540 2.0kb upstream 2.0kb upstream 2000   false scaffold_6: 13781894-13783893 Arabidopsis lyrata
AL6G40540 2.0kb downstream 2.0kb downstream 3152   true scaffold_6: 13778742-13781893 Arabidopsis lyrata
AL6G40540 2.0kb downstream 2.0kb downstream 2000   false scaffold_6: 13778742-13780741 Arabidopsis lyrata
AL6G40540 5.0kb upstream 5.0kb upstream 6152   true scaffold_6: 13780742-13786893 Arabidopsis lyrata
AL6G40540 5.0kb upstream 5.0kb upstream 5000   false scaffold_6: 13781894-13786893 Arabidopsis lyrata
AL6G40540 5.0kb downstream 5.0kb downstream 6152   true scaffold_6: 13775742-13781893 Arabidopsis lyrata
AL6G40540 5.0kb downstream 5.0kb downstream 5000   false scaffold_6: 13775742-13780741 Arabidopsis lyrata
AL6G40540 10.0kb upstream 10.0kb upstream 11152   true scaffold_6: 13780742-13791893 Arabidopsis lyrata
AL6G40540 10.0kb upstream 10.0kb upstream 10000   false scaffold_6: 13781894-13791893 Arabidopsis lyrata
AL6G40540 10.0kb downstream 10.0kb downstream 11152   true scaffold_6: 13770742-13781893 Arabidopsis lyrata
AL6G40540 10.0kb downstream 10.0kb downstream 10000   false scaffold_6: 13770742-13780741 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377291 5261 Brassicaceae View MSA
123839186 5264 Brassicales-Malvales View MSA
124337661 5266 SBM View MSA
124244960 5268 Malvidae View MSA
124063298 5270 Rosid View MSA
123753170 5271 Pentapetalae View MSA
122789282 5272 Eudicot View MSA
122049887 5273 Angiosperm View MSA
121351474 5274 Embryophyte View MSA
123382179 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain