Gene : AL6G39060 A. lyrata v2.1

Defline:  (1 of 5) PTHR31707:SF13 - PECTINESTERASE/PECTINESTERASE INHIBITOR 21-RELATED Genomic Order:  2735
Name:  ? AL6G39060 Secondary Identifier:  ? PAC:35925790

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1081 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL6G39060 0.5kb upstream 0.5kb upstream 3119   true scaffold_6: 12575403-12578521 Arabidopsis lyrata
AL6G39060 0.5kb upstream 0.5kb upstream 500   false scaffold_6: 12575403-12575902 Arabidopsis lyrata
AL6G39060 0.5kb downstream 0.5kb downstream 3119   true scaffold_6: 12575903-12579021 Arabidopsis lyrata
AL6G39060 0.5kb downstream 0.5kb downstream 500   false scaffold_6: 12578522-12579021 Arabidopsis lyrata
AL6G39060 1.0kb upstream 1.0kb upstream 3619   true scaffold_6: 12574903-12578521 Arabidopsis lyrata
AL6G39060 1.0kb upstream 1.0kb upstream 1000   false scaffold_6: 12574903-12575902 Arabidopsis lyrata
AL6G39060 1.0kb downstream 1.0kb downstream 3619   true scaffold_6: 12575903-12579521 Arabidopsis lyrata
AL6G39060 1.0kb downstream 1.0kb downstream 1000   false scaffold_6: 12578522-12579521 Arabidopsis lyrata
AL6G39060 2.0kb upstream 2.0kb upstream 4619   true scaffold_6: 12573903-12578521 Arabidopsis lyrata
AL6G39060 2.0kb upstream 2.0kb upstream 2000   false scaffold_6: 12573903-12575902 Arabidopsis lyrata
AL6G39060 2.0kb downstream 2.0kb downstream 4619   true scaffold_6: 12575903-12580521 Arabidopsis lyrata
AL6G39060 2.0kb downstream 2.0kb downstream 2000   false scaffold_6: 12578522-12580521 Arabidopsis lyrata
AL6G39060 5.0kb upstream 5.0kb upstream 7619   true scaffold_6: 12570903-12578521 Arabidopsis lyrata
AL6G39060 5.0kb upstream 5.0kb upstream 5000   false scaffold_6: 12570903-12575902 Arabidopsis lyrata
AL6G39060 5.0kb downstream 5.0kb downstream 7619   true scaffold_6: 12575903-12583521 Arabidopsis lyrata
AL6G39060 5.0kb downstream 5.0kb downstream 5000   false scaffold_6: 12578522-12583521 Arabidopsis lyrata
AL6G39060 10.0kb upstream 10.0kb upstream 12619   true scaffold_6: 12565903-12578521 Arabidopsis lyrata
AL6G39060 10.0kb upstream 10.0kb upstream 10000   false scaffold_6: 12565903-12575902 Arabidopsis lyrata
AL6G39060 10.0kb downstream 10.0kb downstream 12619   true scaffold_6: 12575903-12588521 Arabidopsis lyrata
AL6G39060 10.0kb downstream 10.0kb downstream 10000   false scaffold_6: 12578522-12588521 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370110 5261 Brassicaceae View MSA
123840524 5264 Brassicales-Malvales View MSA
124341579 5266 SBM View MSA
124251483 5268 Malvidae View MSA
124071187 5270 Rosid View MSA
123743579 5271 Pentapetalae View MSA
122788004 5272 Eudicot View MSA
122050714 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain