Gene : AL6G38650 A. lyrata v2.1

Defline:  (1 of 1) PTHR11680:SF12 - SERINE HYDROXYMETHYLTRANSFERASE 2, MITOCHONDRIAL Genomic Order:  2698
Name:  ? AL6G38650 Secondary Identifier:  ? PAC:35929112

Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata GLYSYN-PWY Arabidopsis lyrata pathologic  
Alyrata PWY-2161 Arabidopsis lyrata pathologic  
Alyrata PWY-3841 Arabidopsis lyrata pathologic  
Alyrata SER-GLYSYN-PWY Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL6G38650 0.5kb upstream 0.5kb upstream 4459   true scaffold_6: 12264738-12269196 Arabidopsis lyrata
AL6G38650 0.5kb upstream 0.5kb upstream 500   false scaffold_6: 12264738-12265237 Arabidopsis lyrata
AL6G38650 0.5kb downstream 0.5kb downstream 4459   true scaffold_6: 12265238-12269696 Arabidopsis lyrata
AL6G38650 0.5kb downstream 0.5kb downstream 500   false scaffold_6: 12269197-12269696 Arabidopsis lyrata
AL6G38650 1.0kb upstream 1.0kb upstream 4959   true scaffold_6: 12264238-12269196 Arabidopsis lyrata
AL6G38650 1.0kb upstream 1.0kb upstream 1000   false scaffold_6: 12264238-12265237 Arabidopsis lyrata
AL6G38650 1.0kb downstream 1.0kb downstream 4959   true scaffold_6: 12265238-12270196 Arabidopsis lyrata
AL6G38650 1.0kb downstream 1.0kb downstream 1000   false scaffold_6: 12269197-12270196 Arabidopsis lyrata
AL6G38650 2.0kb upstream 2.0kb upstream 5959   true scaffold_6: 12263238-12269196 Arabidopsis lyrata
AL6G38650 2.0kb upstream 2.0kb upstream 2000   false scaffold_6: 12263238-12265237 Arabidopsis lyrata
AL6G38650 2.0kb downstream 2.0kb downstream 5959   true scaffold_6: 12265238-12271196 Arabidopsis lyrata
AL6G38650 2.0kb downstream 2.0kb downstream 2000   false scaffold_6: 12269197-12271196 Arabidopsis lyrata
AL6G38650 5.0kb upstream 5.0kb upstream 8959   true scaffold_6: 12260238-12269196 Arabidopsis lyrata
AL6G38650 5.0kb upstream 5.0kb upstream 5000   false scaffold_6: 12260238-12265237 Arabidopsis lyrata
AL6G38650 5.0kb downstream 5.0kb downstream 8959   true scaffold_6: 12265238-12274196 Arabidopsis lyrata
AL6G38650 5.0kb downstream 5.0kb downstream 5000   false scaffold_6: 12269197-12274196 Arabidopsis lyrata
AL6G38650 10.0kb upstream 10.0kb upstream 13959   true scaffold_6: 12255238-12269196 Arabidopsis lyrata
AL6G38650 10.0kb upstream 10.0kb upstream 10000   false scaffold_6: 12255238-12265237 Arabidopsis lyrata
AL6G38650 10.0kb downstream 10.0kb downstream 13959   true scaffold_6: 12265238-12279196 Arabidopsis lyrata
AL6G38650 10.0kb downstream 10.0kb downstream 10000   false scaffold_6: 12269197-12279196 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369702 5261 Brassicaceae View MSA
123827515 5264 Brassicales-Malvales View MSA
124339433 5266 SBM View MSA
124239143 5268 Malvidae View MSA
124064979 5270 Rosid View MSA
123747223 5271 Pentapetalae View MSA
122789073 5272 Eudicot View MSA
122045639 5273 Angiosperm View MSA
121346714 5274 Embryophyte View MSA
123424879 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain