Gene : AL6G33900 A. lyrata v2.1

Defline:  (1 of 1) PTHR11777:SF14 - ALANINE--TRNA LIGASE, CHLOROPLASTIC-RELATED Genomic Order:  2268
Name:  ? AL6G33900 Secondary Identifier:  ? PAC:35929432

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata TRNA-CHARGING-PWY Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL6G33900 0.5kb upstream 0.5kb upstream 4822   true scaffold_6: 9597648-9602469 Arabidopsis lyrata
AL6G33900 0.5kb upstream 0.5kb upstream 500   false scaffold_6: 9601970-9602469 Arabidopsis lyrata
AL6G33900 0.5kb downstream 0.5kb downstream 4822   true scaffold_6: 9597148-9601969 Arabidopsis lyrata
AL6G33900 0.5kb downstream 0.5kb downstream 500   false scaffold_6: 9597148-9597647 Arabidopsis lyrata
AL6G33900 1.0kb upstream 1.0kb upstream 5322   true scaffold_6: 9597648-9602969 Arabidopsis lyrata
AL6G33900 1.0kb upstream 1.0kb upstream 1000   false scaffold_6: 9601970-9602969 Arabidopsis lyrata
AL6G33900 1.0kb downstream 1.0kb downstream 5322   true scaffold_6: 9596648-9601969 Arabidopsis lyrata
AL6G33900 1.0kb downstream 1.0kb downstream 1000   false scaffold_6: 9596648-9597647 Arabidopsis lyrata
AL6G33900 2.0kb upstream 2.0kb upstream 6322   true scaffold_6: 9597648-9603969 Arabidopsis lyrata
AL6G33900 2.0kb upstream 2.0kb upstream 2000   false scaffold_6: 9601970-9603969 Arabidopsis lyrata
AL6G33900 2.0kb downstream 2.0kb downstream 6322   true scaffold_6: 9595648-9601969 Arabidopsis lyrata
AL6G33900 2.0kb downstream 2.0kb downstream 2000   false scaffold_6: 9595648-9597647 Arabidopsis lyrata
AL6G33900 5.0kb upstream 5.0kb upstream 9322   true scaffold_6: 9597648-9606969 Arabidopsis lyrata
AL6G33900 5.0kb upstream 5.0kb upstream 5000   false scaffold_6: 9601970-9606969 Arabidopsis lyrata
AL6G33900 5.0kb downstream 5.0kb downstream 9322   true scaffold_6: 9592648-9601969 Arabidopsis lyrata
AL6G33900 5.0kb downstream 5.0kb downstream 5000   false scaffold_6: 9592648-9597647 Arabidopsis lyrata
AL6G33900 10.0kb upstream 10.0kb upstream 14322   true scaffold_6: 9597648-9611969 Arabidopsis lyrata
AL6G33900 10.0kb upstream 10.0kb upstream 10000   false scaffold_6: 9601970-9611969 Arabidopsis lyrata
AL6G33900 10.0kb downstream 10.0kb downstream 14322   true scaffold_6: 9587648-9601969 Arabidopsis lyrata
AL6G33900 10.0kb downstream 10.0kb downstream 10000   false scaffold_6: 9587648-9597647 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361504 5261 Brassicaceae View MSA
123829787 5264 Brassicales-Malvales View MSA
124345364 5266 SBM View MSA
124242500 5268 Malvidae View MSA
124064161 5270 Rosid View MSA
123740814 5271 Pentapetalae View MSA
122788872 5272 Eudicot View MSA
122048095 5273 Angiosperm View MSA
121348703 5274 Embryophyte View MSA
123425032 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain