Gene : AL6G52870 A. lyrata v2.1

Defline:  (1 of 1) PTHR10491 - DTDP-4-DEHYDRORHAMNOSE REDUCTASE Genomic Order:  3963
Name:  ? AL6G52870 Secondary Identifier:  ? PAC:35926588

Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata ETHYL-PWY Arabidopsis lyrata pathologic  
Alyrata PWY-5041 Arabidopsis lyrata pathologic  
Alyrata PWY-7270 Arabidopsis lyrata pathologic  
Alyrata PWY-7528 Arabidopsis lyrata pathologic  
Alyrata SAM-PWY Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL6G52870 0.5kb upstream 0.5kb upstream 2164   true scaffold_6: 24765770-24767933 Arabidopsis lyrata
AL6G52870 0.5kb upstream 0.5kb upstream 500   false scaffold_6: 24765770-24766269 Arabidopsis lyrata
AL6G52870 0.5kb downstream 0.5kb downstream 2164   true scaffold_6: 24766270-24768433 Arabidopsis lyrata
AL6G52870 0.5kb downstream 0.5kb downstream 500   false scaffold_6: 24767934-24768433 Arabidopsis lyrata
AL6G52870 1.0kb upstream 1.0kb upstream 2664   true scaffold_6: 24765270-24767933 Arabidopsis lyrata
AL6G52870 1.0kb upstream 1.0kb upstream 1000   false scaffold_6: 24765270-24766269 Arabidopsis lyrata
AL6G52870 1.0kb downstream 1.0kb downstream 2664   true scaffold_6: 24766270-24768933 Arabidopsis lyrata
AL6G52870 1.0kb downstream 1.0kb downstream 1000   false scaffold_6: 24767934-24768933 Arabidopsis lyrata
AL6G52870 2.0kb upstream 2.0kb upstream 3664   true scaffold_6: 24764270-24767933 Arabidopsis lyrata
AL6G52870 2.0kb upstream 2.0kb upstream 2000   false scaffold_6: 24764270-24766269 Arabidopsis lyrata
AL6G52870 2.0kb downstream 2.0kb downstream 3664   true scaffold_6: 24766270-24769933 Arabidopsis lyrata
AL6G52870 2.0kb downstream 2.0kb downstream 2000   false scaffold_6: 24767934-24769933 Arabidopsis lyrata
AL6G52870 5.0kb upstream 5.0kb upstream 6664   true scaffold_6: 24761270-24767933 Arabidopsis lyrata
AL6G52870 5.0kb upstream 5.0kb upstream 5000   false scaffold_6: 24761270-24766269 Arabidopsis lyrata
AL6G52870 5.0kb downstream 5.0kb downstream 6664   true scaffold_6: 24766270-24772933 Arabidopsis lyrata
AL6G52870 5.0kb downstream 5.0kb downstream 5000   false scaffold_6: 24767934-24772933 Arabidopsis lyrata
AL6G52870 10.0kb upstream 10.0kb upstream 11664   true scaffold_6: 24756270-24767933 Arabidopsis lyrata
AL6G52870 10.0kb upstream 10.0kb upstream 10000   false scaffold_6: 24756270-24766269 Arabidopsis lyrata
AL6G52870 10.0kb downstream 10.0kb downstream 11664   true scaffold_6: 24766270-24777933 Arabidopsis lyrata
AL6G52870 10.0kb downstream 10.0kb downstream 10000   false scaffold_6: 24767934-24777933 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373265 5261 Brassicaceae View MSA
123833363 5264 Brassicales-Malvales View MSA
124345444 5266 SBM View MSA
124242488 5268 Malvidae View MSA
124068376 5270 Rosid View MSA
123738972 5271 Pentapetalae View MSA
122787583 5272 Eudicot View MSA
122046148 5273 Angiosperm View MSA
121346812 5274 Embryophyte View MSA
123424817 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain