Gene : AL6G46540 A. lyrata v2.1

Defline:  (1 of 4) PTHR18896:SF65 - PHOSPHOLIPASE D BETA 1-RELATED Genomic Order:  3377
Name:  ? AL6G46540 Secondary Identifier:  ? PAC:35928028

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata LIPASYN-PWY Arabidopsis lyrata pathologic  
Alyrata PWY-3561 Arabidopsis lyrata pathologic  
Alyrata PWY-7039 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL6G46540 0.5kb upstream 0.5kb upstream 4711   true scaffold_6: 21565710-21570420 Arabidopsis lyrata
AL6G46540 0.5kb upstream 0.5kb upstream 500   false scaffold_6: 21569921-21570420 Arabidopsis lyrata
AL6G46540 0.5kb downstream 0.5kb downstream 4711   true scaffold_6: 21565210-21569920 Arabidopsis lyrata
AL6G46540 0.5kb downstream 0.5kb downstream 500   false scaffold_6: 21565210-21565709 Arabidopsis lyrata
AL6G46540 1.0kb upstream 1.0kb upstream 5211   true scaffold_6: 21565710-21570920 Arabidopsis lyrata
AL6G46540 1.0kb upstream 1.0kb upstream 1000   false scaffold_6: 21569921-21570920 Arabidopsis lyrata
AL6G46540 1.0kb downstream 1.0kb downstream 5211   true scaffold_6: 21564710-21569920 Arabidopsis lyrata
AL6G46540 1.0kb downstream 1.0kb downstream 1000   false scaffold_6: 21564710-21565709 Arabidopsis lyrata
AL6G46540 2.0kb upstream 2.0kb upstream 6211   true scaffold_6: 21565710-21571920 Arabidopsis lyrata
AL6G46540 2.0kb upstream 2.0kb upstream 2000   false scaffold_6: 21569921-21571920 Arabidopsis lyrata
AL6G46540 2.0kb downstream 2.0kb downstream 6211   true scaffold_6: 21563710-21569920 Arabidopsis lyrata
AL6G46540 2.0kb downstream 2.0kb downstream 2000   false scaffold_6: 21563710-21565709 Arabidopsis lyrata
AL6G46540 5.0kb upstream 5.0kb upstream 9211   true scaffold_6: 21565710-21574920 Arabidopsis lyrata
AL6G46540 5.0kb upstream 5.0kb upstream 5000   false scaffold_6: 21569921-21574920 Arabidopsis lyrata
AL6G46540 5.0kb downstream 5.0kb downstream 9211   true scaffold_6: 21560710-21569920 Arabidopsis lyrata
AL6G46540 5.0kb downstream 5.0kb downstream 5000   false scaffold_6: 21560710-21565709 Arabidopsis lyrata
AL6G46540 10.0kb upstream 10.0kb upstream 14211   true scaffold_6: 21565710-21579920 Arabidopsis lyrata
AL6G46540 10.0kb upstream 10.0kb upstream 10000   false scaffold_6: 21569921-21579920 Arabidopsis lyrata
AL6G46540 10.0kb downstream 10.0kb downstream 14211   true scaffold_6: 21555710-21569920 Arabidopsis lyrata
AL6G46540 10.0kb downstream 10.0kb downstream 10000   false scaffold_6: 21555710-21565709 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374010 5261 Brassicaceae View MSA
123838904 5264 Brassicales-Malvales View MSA
124342671 5266 SBM View MSA
124247063 5268 Malvidae View MSA
124072300 5270 Rosid View MSA
123749008 5271 Pentapetalae View MSA
122790888 5272 Eudicot View MSA
122043294 5273 Angiosperm View MSA
121349961 5274 Embryophyte View MSA
123381517 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain