Gene : AL7G12920 A. lyrata v2.1

Defline:  (1 of 6) K00511 - squalene monooxygenase (SQLE, ERG1) Genomic Order:  280
Name:  ? AL7G12920 Secondary Identifier:  ? PAC:35937672

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-2541 Arabidopsis lyrata pathologic  
Alyrata PWY-5670 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL7G12920 0.5kb upstream 0.5kb upstream 3283   true scaffold_7: 1109258-1112540 Arabidopsis lyrata
AL7G12920 0.5kb upstream 0.5kb upstream 500   false scaffold_7: 1112041-1112540 Arabidopsis lyrata
AL7G12920 0.5kb downstream 0.5kb downstream 3283   true scaffold_7: 1108758-1112040 Arabidopsis lyrata
AL7G12920 0.5kb downstream 0.5kb downstream 500   false scaffold_7: 1108758-1109257 Arabidopsis lyrata
AL7G12920 1.0kb upstream 1.0kb upstream 3783   true scaffold_7: 1109258-1113040 Arabidopsis lyrata
AL7G12920 1.0kb upstream 1.0kb upstream 1000   false scaffold_7: 1112041-1113040 Arabidopsis lyrata
AL7G12920 1.0kb downstream 1.0kb downstream 3783   true scaffold_7: 1108258-1112040 Arabidopsis lyrata
AL7G12920 1.0kb downstream 1.0kb downstream 1000   false scaffold_7: 1108258-1109257 Arabidopsis lyrata
AL7G12920 2.0kb upstream 2.0kb upstream 4783   true scaffold_7: 1109258-1114040 Arabidopsis lyrata
AL7G12920 2.0kb upstream 2.0kb upstream 2000   false scaffold_7: 1112041-1114040 Arabidopsis lyrata
AL7G12920 2.0kb downstream 2.0kb downstream 4783   true scaffold_7: 1107258-1112040 Arabidopsis lyrata
AL7G12920 2.0kb downstream 2.0kb downstream 2000   false scaffold_7: 1107258-1109257 Arabidopsis lyrata
AL7G12920 5.0kb upstream 5.0kb upstream 7783   true scaffold_7: 1109258-1117040 Arabidopsis lyrata
AL7G12920 5.0kb upstream 5.0kb upstream 5000   false scaffold_7: 1112041-1117040 Arabidopsis lyrata
AL7G12920 5.0kb downstream 5.0kb downstream 7783   true scaffold_7: 1104258-1112040 Arabidopsis lyrata
AL7G12920 5.0kb downstream 5.0kb downstream 5000   false scaffold_7: 1104258-1109257 Arabidopsis lyrata
AL7G12920 10.0kb upstream 10.0kb upstream 12783   true scaffold_7: 1109258-1122040 Arabidopsis lyrata
AL7G12920 10.0kb upstream 10.0kb upstream 10000   false scaffold_7: 1112041-1122040 Arabidopsis lyrata
AL7G12920 10.0kb downstream 10.0kb downstream 12783   true scaffold_7: 1099258-1112040 Arabidopsis lyrata
AL7G12920 10.0kb downstream 10.0kb downstream 10000   false scaffold_7: 1099258-1109257 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380334 5261 Brassicaceae View MSA
123838211 5264 Brassicales-Malvales View MSA
124342457 5266 SBM View MSA
124254451 5268 Malvidae View MSA
124072398 5270 Rosid View MSA
123747368 5271 Pentapetalae View MSA
122788930 5272 Eudicot View MSA
122042003 5273 Angiosperm View MSA
121344187 5274 Embryophyte View MSA
123428498 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain