Gene : AL7G10320 A. lyrata v2.1

Defline:  (1 of 1) PTHR12001:SF41 - HETERODIMERIC GERANYLGERANYL PYROPHOSPHATE SYNTHASE SMALL SUBUNIT, CHLOROPLASTIC Genomic Order:  31
Name:  ? AL7G10320 Secondary Identifier:  ? PAC:35937580

Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-5120 Arabidopsis lyrata pathologic  
Alyrata PWY-5122 Arabidopsis lyrata pathologic  
Alyrata PWY-5123 Arabidopsis lyrata pathologic  
Alyrata PWY-5910 Arabidopsis lyrata pathologic  
Alyrata PWY-7709 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL7G10320 0.5kb upstream 0.5kb upstream 1676   true scaffold_7: 109256-110931 Arabidopsis lyrata
AL7G10320 0.5kb upstream 0.5kb upstream 500   false scaffold_7: 109256-109755 Arabidopsis lyrata
AL7G10320 0.5kb downstream 0.5kb downstream 1676   true scaffold_7: 109756-111431 Arabidopsis lyrata
AL7G10320 0.5kb downstream 0.5kb downstream 500   false scaffold_7: 110932-111431 Arabidopsis lyrata
AL7G10320 1.0kb upstream 1.0kb upstream 2176   true scaffold_7: 108756-110931 Arabidopsis lyrata
AL7G10320 1.0kb upstream 1.0kb upstream 1000   false scaffold_7: 108756-109755 Arabidopsis lyrata
AL7G10320 1.0kb downstream 1.0kb downstream 2176   true scaffold_7: 109756-111931 Arabidopsis lyrata
AL7G10320 1.0kb downstream 1.0kb downstream 1000   false scaffold_7: 110932-111931 Arabidopsis lyrata
AL7G10320 2.0kb upstream 2.0kb upstream 3176   true scaffold_7: 107756-110931 Arabidopsis lyrata
AL7G10320 2.0kb upstream 2.0kb upstream 2000   false scaffold_7: 107756-109755 Arabidopsis lyrata
AL7G10320 2.0kb downstream 2.0kb downstream 3176   true scaffold_7: 109756-112931 Arabidopsis lyrata
AL7G10320 2.0kb downstream 2.0kb downstream 2000   false scaffold_7: 110932-112931 Arabidopsis lyrata
AL7G10320 5.0kb upstream 5.0kb upstream 6176   true scaffold_7: 104756-110931 Arabidopsis lyrata
AL7G10320 5.0kb upstream 5.0kb upstream 5000   false scaffold_7: 104756-109755 Arabidopsis lyrata
AL7G10320 5.0kb downstream 5.0kb downstream 6176   true scaffold_7: 109756-115931 Arabidopsis lyrata
AL7G10320 5.0kb downstream 5.0kb downstream 5000   false scaffold_7: 110932-115931 Arabidopsis lyrata
AL7G10320 10.0kb upstream 10.0kb upstream 11176   true scaffold_7: 99756-110931 Arabidopsis lyrata
AL7G10320 10.0kb upstream 10.0kb upstream 10000   false scaffold_7: 99756-109755 Arabidopsis lyrata
AL7G10320 10.0kb downstream 10.0kb downstream 11176   true scaffold_7: 109756-120931 Arabidopsis lyrata
AL7G10320 10.0kb downstream 10.0kb downstream 10000   false scaffold_7: 110932-120931 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371131 5261 Brassicaceae View MSA
123833321 5264 Brassicales-Malvales View MSA
124341620 5266 SBM View MSA
124238583 5268 Malvidae View MSA
124050179 5270 Rosid View MSA
123740099 5271 Pentapetalae View MSA
122794742 5272 Eudicot View MSA
122045849 5273 Angiosperm View MSA
121310516 5274 Embryophyte View MSA
123347979 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain